View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7686_low_10 (Length: 332)

Name: NF7686_low_10
Description: NF7686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7686_low_10
NF7686_low_10
[»] chr6 (9 HSPs)
chr6 (47-314)||(9127822-9128089)
chr6 (47-150)||(33415856-33415959)
chr6 (47-134)||(24632290-24632377)
chr6 (47-136)||(33294341-33294430)
chr6 (1-44)||(9127731-9127774)
chr6 (47-98)||(9164938-9164989)
chr6 (48-98)||(33270574-33270624)
chr6 (205-242)||(30031498-30031535)
chr6 (203-243)||(24698858-24698898)
[»] chr1 (6 HSPs)
chr1 (204-241)||(45168483-45168520)
chr1 (203-242)||(25715327-25715366)
chr1 (203-242)||(44751726-44751765)
chr1 (213-242)||(27847811-27847840)
chr1 (201-242)||(52561588-52561629)
chr1 (201-233)||(52292290-52292322)
[»] chr8 (3 HSPs)
chr8 (203-242)||(10668498-10668537)
chr8 (206-242)||(26055663-26055699)
chr8 (205-241)||(43903921-43903957)
[»] chr7 (1 HSPs)
chr7 (203-242)||(12966258-12966297)
[»] chr4 (6 HSPs)
chr4 (203-242)||(6957840-6957879)
chr4 (203-242)||(26024851-26024890)
chr4 (203-242)||(31961267-31961306)
chr4 (203-244)||(8327141-8327182)
chr4 (205-233)||(31339775-31339803)
chr4 (203-243)||(49416948-49416988)
[»] chr2 (3 HSPs)
chr2 (203-238)||(10516750-10516785)
chr2 (205-242)||(43970022-43970059)
chr2 (203-235)||(12882046-12882078)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 47 - 314
Target Start/End: Original strand, 9127822 - 9128089
Alignment:
Q  47 ttttggtagaagtaaactgcgagaaagattttgtctcctgaggtgaaatttttgaagagcttgttgatgatatagccatgcaagtggctgaatgccctca 146  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9127822 ttttggtagaagtaaactgcgagaaagattttgactcctgaggtgaagtttttaaagagcttgttgatgatatagccatgcaagtggctgaatgccctca 9127921  T
Q  147 agtacacgataggttgatcaaggttgcatttcacattttcctattgtttttacaaccaacaacaagcaagccttatcccactaagtgagatcggcttact 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9127922 agtacacgataggttgatcaaggttgcatttcacattttcctattgtttttacaaccaacagcaagcaagccttatcccactaagtgagatcggcttact 9128021  T
Q  247 ttgagtgtgtcatcgcccgtttacaaaatagtacaacatcattttgttaaaattccgttgtgcatagc 314  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9128022 ttgagtgcgtcatcgcccgtttacaaaatagtacaacatcattttgttaaaattccgttgtgcatagc 9128089  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 33415959 - 33415856
Alignment:
Q  47 ttttggtagaagtaaactgcgagaaagattttgtctcctgaggtgaaatttttgaagagcttgttgatgatatagccatgcaagtggctgaatgccctca 146  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||||  ||||| ||    
T  33415959 ttttagtagaagtaaactgcgagacagattttgtctcccgaggtgaaattttcaaagagcttgtcgatgatatagccatgcaagtggctgcgtgccccca 33415860  T
Q  147 agta 150  Q
    ||||    
T  33415859 agta 33415856  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 24632290 - 24632377
Alignment:
Q  47 ttttggtagaagtaaactgcgagaaagattttgtctcctgaggtgaaatttttgaagagcttgttgatgatatagccatgcaagtggc 134  Q
    |||| |||||||||||||| |||| |||||| |||||| |||||||||||||   ||||| ||| ||||||||| |||||||||||||    
T  24632290 ttttagtagaagtaaactgtgagacagatttcgtctcccgaggtgaaattttcatagagcatgtcgatgatataaccatgcaagtggc 24632377  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 33294430 - 33294341
Alignment:
Q  47 ttttggtagaagtaaactgcgagaaagattttgtctcctgaggtgaaatttttgaagagcttgttgatgatatagccatgcaagtggctg 136  Q
    |||||||||||||||||||| ||| || |||| ||||| |||||||||||||  || ||||||| ||| |||||||||||  ||||||||    
T  33294430 ttttggtagaagtaaactgcaagacaggttttctctcccgaggtgaaattttcaaacagcttgtcgattatatagccatgagagtggctg 33294341  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9127731 - 9127774
Alignment:
Q  1 taaaaaagggttcacgagtgcagacaagaaatcagccagagcaa 44  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  9127731 taaaaaaggcttcacgagtgcagacaagaaatcagccagagcaa 9127774  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 9164989 - 9164938
Alignment:
Q  47 ttttggtagaagtaaactgcgagaaagattttgtctcctgaggtgaaatttt 98  Q
    |||||||||||||||| ||||||||||||||  |||||  ||||||||||||    
T  9164989 ttttggtagaagtaaaatgcgagaaagatttattctcccaaggtgaaatttt 9164938  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 33270624 - 33270574
Alignment:
Q  48 tttggtagaagtaaactgcgagaaagattttgtctcctgaggtgaaatttt 98  Q
    ||||||||||||||||||||||| | |||||||||||  | ||||||||||    
T  33270624 tttggtagaagtaaactgcgagacaaattttgtctcccaaagtgaaatttt 33270574  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 30031535 - 30031498
Alignment:
Q  205 acaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  30031535 acaacaaccaagccttatcccactaagtgaggtcggct 30031498  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 24698858 - 24698898
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggctt 243  Q
    ||||||||| |||||||||||||||||| || |||||||||    
T  24698858 caacaacaaccaagccttatcccactaaatgggatcggctt 24698898  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 45168483 - 45168520
Alignment:
Q  204 aacaacaagcaagccttatcccactaagtgagatcggc 241  Q
    |||||||| |||||||||||||||||||||||||||||    
T  45168483 aacaacaaacaagccttatcccactaagtgagatcggc 45168520  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 25715327 - 25715366
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  25715327 caacaacaaccaagccttatcccactaagtgaggtcggct 25715366  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 44751765 - 44751726
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  44751765 caacaacaaccaagccttatcccactaagtgaggtcggct 44751726  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 27847811 - 27847840
Alignment:
Q  213 caagccttatcccactaagtgagatcggct 242  Q
    ||||||||||||||||||||||||||||||    
T  27847811 caagccttatcccactaagtgagatcggct 27847840  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 52561588 - 52561629
Alignment:
Q  201 accaacaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||||||| ||||||||||||||||||||| | ||||||    
T  52561588 accaacaacaaccaagccttatcccactaagtggggtcggct 52561629  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 52292322 - 52292290
Alignment:
Q  201 accaacaacaagcaagccttatcccactaagtg 233  Q
    ||||||||||| |||||||||||||||||||||    
T  52292322 accaacaacaaccaagccttatcccactaagtg 52292290  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 10668498 - 10668537
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  10668498 caacaacaaccaagccttatcccactaagtgaggtcggct 10668537  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 26055699 - 26055663
Alignment:
Q  206 caacaagcaagccttatcccactaagtgagatcggct 242  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  26055699 caacaaccaagccttatcccactaagtgggatcggct 26055663  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 43903921 - 43903957
Alignment:
Q  205 acaacaagcaagccttatcccactaagtgagatcggc 241  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  43903921 acaacaaccaagccttatcccactaagtgaggtcggc 43903957  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 12966297 - 12966258
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  12966297 caacaacaaccaagccttatcccactaagtgggatcggct 12966258  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 6957879 - 6957840
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  6957879 caacaacaaccaagccttatcccactaagtgggatcggct 6957840  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 26024851 - 26024890
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  26024851 caacaacaaccaagccttatcccactaagtgaggtcggct 26024890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 31961267 - 31961306
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  31961267 caacaacaaccaagccttatcccactaagtgaggtcggct 31961306  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 8327182 - 8327141
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggctta 244  Q
    ||||||||| ||||||||||||||||||||| | ||||||||    
T  8327182 caacaacaaccaagccttatcccactaagtggggtcggctta 8327141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 31339803 - 31339775
Alignment:
Q  205 acaacaagcaagccttatcccactaagtg 233  Q
    |||||||||||||||||||||||||||||    
T  31339803 acaacaagcaagccttatcccactaagtg 31339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 49416988 - 49416948
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatcggctt 243  Q
    ||||||||| ||||||||||||||||||||| | |||||||    
T  49416988 caacaacaaccaagccttatcccactaagtggggtcggctt 49416948  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 10516750 - 10516785
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgagatc 238  Q
    ||||||||| ||||||||||||||||||||||||||    
T  10516750 caacaacaaccaagccttatcccactaagtgagatc 10516785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 43970059 - 43970022
Alignment:
Q  205 acaacaagcaagccttatcccactaagtgagatcggct 242  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  43970059 acaacaaccaagccttatccaactaagtgagatcggct 43970022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 12882046 - 12882078
Alignment:
Q  203 caacaacaagcaagccttatcccactaagtgag 235  Q
    ||||||||| |||||||||||||||||||||||    
T  12882046 caacaacaaccaagccttatcccactaagtgag 12882078  T

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