View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7686_low_17 (Length: 217)
Name: NF7686_low_17
Description: NF7686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7686_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 3798224 - 3798044
Alignment:
| Q |
20 |
aattgcataagggggttaacatgtccttgaactggaaatggtataacaagaaaatgaggcaatatactcatttgctttgttgctagctagaaaataatta |
119 |
Q |
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| T |
3798224 |
aattgcataagggggttaacatgtccttgaactggaaatggtataacaagaaaatgaggcaatatactcatttgctttgttgctagctagaaaataatta |
3798125 |
T |
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| Q |
120 |
tattattatgataagaattgcaaatatttttaggacagaagaatggttcttggatgaaatatttgtactttgtattcattt |
200 |
Q |
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| T |
3798124 |
tattattatgacaagaattgcaaatatttttaggacagaagaatggttcttggatgaaatatttgtactttgtattcattt |
3798044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 3791133 - 3791308
Alignment:
| Q |
20 |
aattgcataagggggttaacatgtccttgaactggaaatggtataacaagaaaatgaggcaatatactcatttgctttgttgctagctagaaaataatta |
119 |
Q |
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| T |
3791133 |
aattgcataaggggattcacatgtccttgaactggatatggtatagcaagaaaatgaggcaatataaccatttgcttagtt----gctggaaaataatta |
3791228 |
T |
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| Q |
120 |
tattattatgataagaattgcaaatatttttaggacagaagaatggttcttggatgaaatatttgtactttgtattcattt |
200 |
Q |
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| T |
3791229 |
tattattgtgacaagaattgaaaata-ttttaggacagaagaacggctcttgggtgaaatatttgtactttgtattcattt |
3791308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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