View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7686_low_2 (Length: 461)
Name: NF7686_low_2
Description: NF7686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7686_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 7340402 - 7340708
Alignment:
| Q |
1 |
ctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacattttgtgt |
100 |
Q |
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| T |
7340402 |
ctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatgcttccacttggtaatgcatgagtttttcttgattgaacattttgtgt |
7340501 |
T |
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| Q |
101 |
gtagtaactgtggaatttaaaaatataagcaaaaaggttcgtgtgtttgtgatgacgaaaaatgagaaaggggaaagggaagttttataaggggttgaag |
200 |
Q |
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| T |
7340502 |
gtagtaactgtggaatttaacaatataagcaaaaaggttcgtgtgtttgtgatgatgaaaaatgagaaacgggaaagggaagttttataaggggttgaag |
7340601 |
T |
|
| Q |
201 |
ggagtgtgagaaaaaatccaagatgtggtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcggaggagcctgttctgaggg |
300 |
Q |
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| T |
7340602 |
ggagtgtgagaaaaaatctaagatgtggtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcagaggagcatgttctgaggg |
7340701 |
T |
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| Q |
301 |
ttgtttt |
307 |
Q |
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||||||| |
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| T |
7340702 |
ttgtttt |
7340708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 341 - 446
Target Start/End: Original strand, 7340740 - 7340845
Alignment:
| Q |
341 |
agtggaaaatgcaaaaaagaacaaacattaggtcgatcaaaagctgttttttgagcttataggaaaggtggctgtttgactgacacagacaaacagacac |
440 |
Q |
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| T |
7340740 |
agtggaaaatgcaaaaaagaacaaacattaggtcgatcaaaagctgttttttgagcttatgggaaaggtggctgtttgactgacacagacaaacagacac |
7340839 |
T |
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| Q |
441 |
atatat |
446 |
Q |
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|||||| |
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| T |
7340840 |
atatat |
7340845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7300062 - 7299969
Alignment:
| Q |
1 |
ctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacatt |
94 |
Q |
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| T |
7300062 |
ctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacatt |
7299969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 7333613 - 7333706
Alignment:
| Q |
1 |
ctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacatt |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333613 |
ctccatttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacatt |
7333706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 7299809 - 7299741
Alignment:
| Q |
228 |
gtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcggaggagcctgttctg |
296 |
Q |
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|||||||||| ||||||||| |||||||| || |||||| ||||||||||||||||||||| ||||||| |
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| T |
7299809 |
gtgtgtggaagaatgttggggaccatagggtacttggtttgtctgttattgtcggaggagcgtgttctg |
7299741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 7376330 - 7376402
Alignment:
| Q |
22 |
tgttcttactctcatgtagtagctcc---atgatggttctacttggtaatgcatcagtttctcttgattgaaca |
92 |
Q |
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| T |
7376330 |
tgttcttactctcatgtagtagctccatgatgatggttc-acttggcaatgcatgtgtttctcttgattgaaca |
7376402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 7333867 - 7333935
Alignment:
| Q |
228 |
gtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcggaggagcctgttctg |
296 |
Q |
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|||||||||| ||||||| | |||||||| || |||||| ||||||||||||||||| ||| ||||||| |
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| T |
7333867 |
gtgtgtggaagaatgttgtggaccatagggtacttggtttgtctgttattgtcggagaagcgtgttctg |
7333935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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