View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7686_low_4 (Length: 443)
Name: NF7686_low_4
Description: NF7686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7686_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 9739010 - 9738793
Alignment:
| Q |
14 |
atatggcacgcataaccctattgcaatggaagccagcttgcgcaaaggagggctatggcgaaggagaagagctgaataacagtgggacttctcgtcatga |
113 |
Q |
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| T |
9739010 |
atatggcacgcataaccctattgcaatggtagccagcttgcgcaaaggagggccacggcgaaggagaagagctaaataacagcgggacttctcgtcatga |
9738911 |
T |
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| Q |
114 |
acaaagtaaatggaggaaattggcagagggggaggtaaagtgcattattggcacgacaattttcaaggaggaagatttgttatgacattggtatgtgtct |
213 |
Q |
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| T |
9738910 |
acaaagtaaatggaggaaactggcagagggggaggtaaagtgcattattggcacgacaattttcaaggaggaag-gttgttatggcattggtatgtgtct |
9738812 |
T |
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| Q |
214 |
tagaggaaggcacacataa |
232 |
Q |
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| T |
9738811 |
tagaggaaggcacacataa |
9738793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 293
Target Start/End: Complemental strand, 46016619 - 46016436
Alignment:
| Q |
109 |
catgaacaaagtaaatggaggaaattggcagagggggaggtaaagtgcattattggcacgacaattttcaaggaggaa-gatttgttatgacattggtat |
207 |
Q |
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| T |
46016619 |
catgaacaaagtagaaggaggaaattggaagaggggaaggtaaagtgcatgatcaatgcgacaattttcaaggaggaatgat--gttatggcattagcat |
46016522 |
T |
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| Q |
208 |
gtgtcttagaggaaggcacacataatatataaaagctaggacgaattggtttcaaggattaccacaacctcacaaggcggaagcaa |
293 |
Q |
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| T |
46016521 |
gtgtcttggaggaaggcgtggcaaaaatataaaagctaggacaacttggttttaaggattaccacaacttcacgaggcggaagcaa |
46016436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 396
Target Start/End: Complemental strand, 35529262 - 35529153
Alignment:
| Q |
287 |
gaagcaagggcattaaaggaaacgataaaatggtttggtagtttgggtttgtctaatgtgtctcttgaacttgattataagcaagtggttgatgacatca |
386 |
Q |
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|||||||| | |||||||||| ||||||| |||||||||||||||| ||||||||| | |||| ||||||||||||| |||||||||||| | |||||| |
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| T |
35529262 |
gaagcaagaggattaaaggaagcgataaattggtttggtagtttggatttgtctaacgcgtctattgaacttgattacaagcaagtggttcacgacatcg |
35529163 |
T |
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| Q |
387 |
ctaggagact |
396 |
Q |
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|||||||||| |
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| T |
35529162 |
ctaggagact |
35529153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 378
Target Start/End: Original strand, 5460698 - 5460844
Alignment:
| Q |
232 |
atatataaaagctaggacgaattggtttcaaggattaccacaacctcacaaggcggaagcaagggcattaaaggaaacgataaaatggtttggtagtttg |
331 |
Q |
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| T |
5460698 |
atatataaaagctaggacaacttggtttctaggattaccacaatctcacaaggcggaagcaaaatgattaaaggaagcgataaagtggcttggtagcttg |
5460797 |
T |
|
| Q |
332 |
ggtttgtctaatgtgtctcttgaacttgattataagcaagtggttga |
378 |
Q |
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| T |
5460798 |
ggtttgtctaatgtgtctatcaaaattgattgcaagcaagtggttga |
5460844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 362
Target Start/End: Complemental strand, 4631331 - 4631200
Alignment:
| Q |
231 |
aatatataaaagctaggacgaattggtttcaaggattaccacaacctcacaaggcgg-aagcaagggcattaaaggaaacgataaaatggtttggtagtt |
329 |
Q |
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||||||||||||||| ||| | ||| ||||||||||| |||||| |||| |||||| ||| ||| | |||||||||| | ||||| ||| ||||||||| |
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| T |
4631331 |
aatatataaaagctatgacaacttgatttcaaggattgccacaatatcacgaggcggaaagtaagag-attaaaggaagcaataaattggcttggtagtt |
4631233 |
T |
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| Q |
330 |
tgggtttgtctaatgtgtctcttgaacttgatt |
362 |
Q |
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| T |
4631232 |
taggtttttctaacgtgtctatcaaacttgatt |
4631200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 8237136 - 8237189
Alignment:
| Q |
254 |
tggtttcaaggattaccacaacctcacaaggcggaagcaagggcattaaaggaa |
307 |
Q |
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| T |
8237136 |
tggtttcaaggtttaccacaacctcatgaggcggaaacaaggggattaaaggaa |
8237189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 378
Target Start/End: Original strand, 26917249 - 26917327
Alignment:
| Q |
300 |
taaaggaaacgataaaatggtttggtagtttgggtttgtctaatgtgtctcttgaacttgattataagcaagtggttga |
378 |
Q |
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| T |
26917249 |
taaaggagacgataaaatggtttggaagtatgggtctatctaagatgtctatcgaacttgattgcaagcaagtggttga |
26917327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 24588741 - 24588653
Alignment:
| Q |
338 |
tctaatgtgtctcttgaacttgattataagcaagtggttgatgacatcactaggagacttagctcatattccatgttcggctctattct |
426 |
Q |
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| T |
24588741 |
tctaaggtgtctatcgaacttgattgcaagcaagtggttgacgacataactaggggactcaacaccaattccatgtttggcgctattct |
24588653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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