View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7686_low_9 (Length: 339)
Name: NF7686_low_9
Description: NF7686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7686_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 12794544 - 12794229
Alignment:
| Q |
22 |
tattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgtttctacaaccaggtctatcatctttcctcacatactccct |
121 |
Q |
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||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794544 |
tattgttcatacgatgaacataaaacaaaaactaacgacttacaaaatcaagaatagtgtttctacaaccaggtctatcatctttcctcacatactccct |
12794445 |
T |
|
| Q |
122 |
cgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccccaaaacttctatgcccaaaatacccctccgcctccacc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794444 |
cgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccccaaaacttctatgcccaaaatacccctccgcctccacc |
12794345 |
T |
|
| Q |
222 |
ttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacaccttcgaactcatccaacttaaccacagcgtcatctgtaa |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
12794344 |
ttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacaccttcgaactcatccaacttaaccacagcgtcatccgaaa |
12794245 |
T |
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| Q |
322 |
ccgcgtacacttctcc |
337 |
Q |
| |
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||||||| |||||||| |
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| T |
12794244 |
ccgcgtaaacttctcc |
12794229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 12731752 - 12731439
Alignment:
| Q |
22 |
tattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgtttctacaaccaggtctatcatctttcctcacatactccct |
121 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12731752 |
tattgttcatacgatgaacacaa--caaaaactaacgacttacaaaatcaagaatagtgtttctacaaccaggtctatcatctttcctcacatactccct |
12731655 |
T |
|
| Q |
122 |
cgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccccaaaacttctatgcccaaaatacccctccgcctccacc |
221 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12731654 |
cgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccccaaaacttctatgcccaaaatacccctccgcctccacc |
12731555 |
T |
|
| Q |
222 |
ttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacaccttcgaactcatccaacttaaccacagcgtcatctgtaa |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
12731554 |
ttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacaccttcgaactcatccaacttaaccacagcgtcatccgaaa |
12731455 |
T |
|
| Q |
322 |
ccgcgtacacttctcc |
337 |
Q |
| |
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||||||| |||||||| |
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| T |
12731454 |
ccgcgtaaacttctcc |
12731439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 12739745 - 12739682
Alignment:
| Q |
89 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaa |
153 |
Q |
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||||||| |||| |||||||||||||||||| |||| ||| |||| |||||||| | |||||||| |
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| T |
12739745 |
accaggtatatcctctttcctcacatactccttcgcttcactctc-ccatactccatcaacccaa |
12739682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 12802568 - 12802505
Alignment:
| Q |
89 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaa |
153 |
Q |
| |
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||||||| |||| |||||||||||||||||| |||| ||| |||| |||||||| | |||||||| |
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| T |
12802568 |
accaggtatatcctctttcctcacatactccttcgcttcactctc-ccatactccatcaacccaa |
12802505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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