View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7687_high_16 (Length: 338)

Name: NF7687_high_16
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7687_high_16
NF7687_high_16
[»] chr5 (27 HSPs)
chr5 (59-323)||(42563069-42563334)
chr5 (1-54)||(2854393-2854446)
chr5 (1-54)||(2852890-2852943)
chr5 (1-63)||(17574313-17574375)
chr5 (12-54)||(21843035-21843077)
chr5 (1-59)||(24541279-24541337)
chr5 (1-54)||(30463904-30463957)
chr5 (1-59)||(40782243-40782301)
chr5 (1-54)||(2179791-2179844)
chr5 (1-54)||(17577967-17578020)
chr5 (1-54)||(28822122-28822175)
chr5 (1-54)||(29620142-29620195)
chr5 (1-54)||(34328859-34328912)
chr5 (1-54)||(36057680-36057733)
chr5 (1-54)||(40780554-40780607)
chr5 (1-54)||(42471552-42471605)
chr5 (1-54)||(42473674-42473727)
chr5 (20-59)||(8539674-8539713)
chr5 (1-60)||(12738768-12738827)
chr5 (1-60)||(12801591-12801650)
chr5 (1-59)||(7269478-7269536)
chr5 (1-54)||(8541303-8541356)
chr5 (1-54)||(29621848-29621901)
chr5 (59-119)||(20700258-20700318)
chr5 (19-54)||(7267847-7267882)
chr5 (80-146)||(14810360-14810426)
chr5 (29-61)||(28813827-28813859)
[»] chr1 (39 HSPs)
chr1 (1-60)||(26223585-26223644)
chr1 (1-54)||(33602711-33602764)
chr1 (1-59)||(46583623-46583681)
chr1 (1-54)||(8169600-8169653)
chr1 (1-62)||(25278435-25278496)
chr1 (1-54)||(34776573-34776626)
chr1 (1-61)||(9120036-9120096)
chr1 (1-54)||(2869583-2869636)
chr1 (1-54)||(4854414-4854467)
chr1 (1-62)||(4856033-4856094)
chr1 (1-54)||(6816869-6816922)
chr1 (1-54)||(8167946-8167999)
chr1 (12-65)||(25276735-25276788)
chr1 (1-54)||(37344346-37344399)
chr1 (1-54)||(46582014-46582067)
chr1 (1-54)||(50554167-50554220)
chr1 (1-61)||(27089311-27089371)
chr1 (1-60)||(31236817-31236876)
chr1 (1-54)||(33599191-33599244)
chr1 (1-54)||(34778205-34778258)
chr1 (1-54)||(37345994-37346047)
chr1 (1-54)||(47013149-47013202)
chr1 (1-60)||(27087281-27087340)
chr1 (1-60)||(45044947-45045006)
chr1 (4-54)||(9121738-9121788)
chr1 (1-47)||(33599229-33599275)
chr1 (1-54)||(1442554-1442607)
chr1 (18-59)||(6818762-6818803)
chr1 (1-54)||(47011460-47011513)
chr1 (1-54)||(52641892-52641945)
chr1 (1-61)||(25278851-25278911)
chr1 (1-61)||(31238562-31238622)
chr1 (20-59)||(25279039-25279078)
chr1 (1-59)||(3013543-3013601)
chr1 (1-59)||(37088168-37088226)
chr1 (1-54)||(1444213-1444266)
chr1 (1-54)||(2871108-2871161)
chr1 (1-54)||(3011859-3011912)
chr1 (1-54)||(52643682-52643735)
[»] chr8 (35 HSPs)
chr8 (1-59)||(29237150-29237208)
chr8 (1-54)||(33707210-33707263)
chr8 (1-62)||(35509210-35509271)
chr8 (1-59)||(33762745-33762803)
chr8 (1-59)||(38548863-38548921)
chr8 (1-54)||(601736-601789)
chr8 (1-54)||(8608241-8608294)
chr8 (1-54)||(27691158-27691211)
chr8 (1-54)||(27692869-27692922)
chr8 (1-54)||(35510851-35510904)
chr8 (4-54)||(29239222-29239272)
chr8 (1-60)||(13106802-13106861)
chr8 (1-63)||(13284027-13284089)
chr8 (1-59)||(15308293-15308351)
chr8 (1-59)||(15488662-15488720)
chr8 (1-59)||(33761068-33761126)
chr8 (1-54)||(600764-600817)
chr8 (1-54)||(13282482-13282535)
chr8 (1-54)||(27404214-27404267)
chr8 (1-54)||(34681098-34681151)
chr8 (1-54)||(42943458-42943511)
chr8 (1-60)||(8609874-8609933)
chr8 (1-54)||(5036449-5036502)
chr8 (1-54)||(26238730-26238783)
chr8 (1-54)||(33708891-33708943)
chr8 (1-54)||(42941778-42941831)
chr8 (14-65)||(5038107-5038157)
chr8 (15-62)||(13486200-13486247)
chr8 (18-64)||(22273940-22273986)
chr8 (1-59)||(38547227-38547285)
chr8 (20-54)||(41825750-41825784)
chr8 (1-54)||(13108423-13108476)
chr8 (1-50)||(13484553-13484602)
chr8 (1-54)||(27406984-27407037)
chr8 (20-60)||(43262188-43262228)
[»] chr4 (27 HSPs)
chr4 (1-59)||(51013918-51013976)
chr4 (1-54)||(319277-319330)
chr4 (1-54)||(33264386-33264439)
chr4 (1-59)||(43507166-43507224)
chr4 (1-54)||(4173772-4173825)
chr4 (1-54)||(43508685-43508738)
chr4 (1-54)||(43519428-43519481)
chr4 (1-63)||(833218-833280)
chr4 (1-59)||(49524765-49524823)
chr4 (12-59)||(320943-320990)
chr4 (1-60)||(35401747-35401806)
chr4 (1-59)||(5439679-5439737)
chr4 (59-145)||(29575428-29575514)
chr4 (1-54)||(4169690-4169743)
chr4 (7-59)||(11254118-11254170)
chr4 (1-59)||(5437810-5437868)
chr4 (5-54)||(41761817-41761866)
chr4 (1-54)||(48645259-48645312)
chr4 (14-54)||(51011930-51011970)
chr4 (1-48)||(39345574-39345621)
chr4 (1-59)||(835074-835132)
chr4 (1-59)||(41781538-41781596)
chr4 (20-54)||(48813791-48813825)
chr4 (1-54)||(33266042-33266095)
chr4 (12-53)||(43521152-43521193)
chr4 (14-54)||(20819989-20820029)
chr4 (18-54)||(49523128-49523164)
[»] chr3 (39 HSPs)
chr3 (1-63)||(3150247-3150309)
chr3 (1-61)||(53187739-53187799)
chr3 (1-59)||(53094305-53094363)
chr3 (1-54)||(2379015-2379068)
chr3 (1-54)||(38193542-38193595)
chr3 (1-54)||(41979384-41979437)
chr3 (1-54)||(46308811-46308864)
chr3 (1-54)||(46310468-46310521)
chr3 (1-54)||(54900106-54900159)
chr3 (1-60)||(54898435-54898494)
chr3 (1-54)||(28626415-28626468)
chr3 (1-54)||(46611335-46611388)
chr3 (1-61)||(46609146-46609206)
chr3 (1-52)||(2660218-2660269)
chr3 (1-59)||(30598336-30598394)
chr3 (1-54)||(2226239-2226292)
chr3 (1-54)||(7884931-7884984)
chr3 (1-54)||(38191899-38191952)
chr3 (1-54)||(41977754-41977807)
chr3 (1-54)||(44795922-44795975)
chr3 (1-54)||(53190846-53190899)
chr3 (1-53)||(2661940-2661992)
chr3 (14-54)||(43765141-43765181)
chr3 (1-63)||(611254-611316)
chr3 (4-54)||(7883332-7883382)
chr3 (1-59)||(27899168-27899226)
chr3 (1-59)||(44794207-44794264)
chr3 (1-54)||(23291574-23291627)
chr3 (1-54)||(35903829-35903882)
chr3 (18-59)||(44267980-44268021)
chr3 (1-54)||(53092627-53092680)
chr3 (14-54)||(42282518-42282558)
chr3 (18-54)||(46112491-46112527)
chr3 (14-48)||(17517018-17517052)
chr3 (1-59)||(21348722-21348780)
chr3 (19-60)||(600723-600764)
chr3 (1-54)||(3152305-3152358)
chr3 (1-45)||(35905799-35905843)
chr3 (20-60)||(51684608-51684648)
[»] chr7 (35 HSPs)
chr7 (1-61)||(27666132-27666192)
chr7 (1-54)||(29994910-29994963)
chr7 (1-54)||(29996581-29996634)
chr7 (1-60)||(35403651-35403710)
chr7 (1-54)||(56334-56387)
chr7 (1-54)||(78046-78099)
chr7 (1-54)||(39857649-39857702)
chr7 (1-59)||(20479751-20479809)
chr7 (1-54)||(23904587-23904640)
chr7 (1-54)||(27664434-27664487)
chr7 (1-54)||(35401973-35402026)
chr7 (14-54)||(35691431-35691471)
chr7 (1-59)||(13169715-13169773)
chr7 (14-63)||(6605442-6605491)
chr7 (1-54)||(20478046-20478099)
chr7 (1-54)||(24226585-24226638)
chr7 (1-54)||(37113945-37113998)
chr7 (1-54)||(38474210-38474263)
chr7 (1-54)||(39859296-39859349)
chr7 (21-54)||(47384298-47384331)
chr7 (12-60)||(45361319-45361367)
chr7 (14-54)||(48227986-48228026)
chr7 (59-146)||(13010177-13010264)
chr7 (1-63)||(22155879-22155941)
chr7 (1-63)||(22211794-22211856)
chr7 (4-54)||(23906302-23906352)
chr7 (1-63)||(45359331-45359393)
chr7 (20-54)||(46437111-46437145)
chr7 (1-59)||(47386276-47386334)
chr7 (162-207)||(34249748-34249792)
chr7 (80-117)||(34693145-34693182)
chr7 (1-54)||(37115593-37115646)
chr7 (1-54)||(38549551-38549604)
chr7 (14-54)||(34775002-34775042)
chr7 (27-59)||(35693434-35693466)
[»] scaffold0058 (3 HSPs)
scaffold0058 (1-62)||(14375-14436)
scaffold0058 (1-61)||(3291-3351)
scaffold0058 (1-61)||(4463-4523)
[»] chr2 (25 HSPs)
chr2 (1-54)||(14387353-14387406)
chr2 (1-61)||(16764643-16764703)
chr2 (1-59)||(16763075-16763133)
chr2 (1-60)||(16376734-16376793)
chr2 (1-59)||(6783363-6783421)
chr2 (1-54)||(19906686-19906739)
chr2 (1-54)||(24205602-24205655)
chr2 (1-54)||(39663158-39663211)
chr2 (1-54)||(40561910-40561963)
chr2 (12-64)||(37020502-37020554)
chr2 (4-59)||(6786071-6786126)
chr2 (1-64)||(37022217-37022280)
chr2 (13-60)||(42517556-42517603)
chr2 (1-59)||(2577512-2577570)
chr2 (1-59)||(14389171-14389229)
chr2 (5-59)||(39664839-39664893)
chr2 (14-59)||(2766933-2766978)
chr2 (1-54)||(17696210-17696263)
chr2 (1-54)||(24208129-24208182)
chr2 (1-61)||(44709832-44709892)
chr2 (1-54)||(6799440-6799493)
chr2 (1-54)||(34400318-34400371)
chr2 (21-54)||(42519313-42519346)
chr2 (22-54)||(19908355-19908387)
chr2 (1-61)||(40560220-40560280)
[»] chr6 (24 HSPs)
chr6 (1-65)||(32516870-32516934)
chr6 (1-59)||(13613649-13613707)
chr6 (1-54)||(32455958-32456011)
chr6 (1-54)||(32518529-32518582)
chr6 (11-54)||(18645145-18645188)
chr6 (1-59)||(3480689-3480747)
chr6 (1-54)||(11355226-11355279)
chr6 (1-54)||(11357226-11357279)
chr6 (1-54)||(32437144-32437197)
chr6 (14-54)||(9400080-9400120)
chr6 (4-54)||(6902932-6902982)
chr6 (1-59)||(13610689-13610747)
chr6 (1-59)||(32439158-32439216)
chr6 (1-59)||(32454247-32454305)
chr6 (1-40)||(3456766-3456805)
chr6 (1-60)||(7371173-7371232)
chr6 (20-54)||(8605376-8605410)
chr6 (1-59)||(10568398-10568456)
chr6 (20-54)||(10569970-10570004)
chr6 (20-54)||(21091110-21091144)
chr6 (14-59)||(6899484-6899529)
chr6 (1-54)||(7373025-7373078)
chr6 (1-54)||(20525366-20525419)
chr6 (14-54)||(21068629-21068669)
[»] scaffold0081 (1 HSPs)
scaffold0081 (1-59)||(54290-54348)
[»] scaffold0345 (1 HSPs)
scaffold0345 (1-54)||(1587-1640)
[»] scaffold1712 (1 HSPs)
scaffold1712 (1-60)||(980-1039)
[»] scaffold0564 (1 HSPs)
scaffold0564 (21-54)||(8266-8299)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 59 - 323
Target Start/End: Original strand, 42563069 - 42563334
Alignment:
Q  59 aataatagcaatactaggagaaattacatcaaaagtacttcctgaagcatgggataaggctgctcatgtgagagcatgagcgctaccgnnnnnnnnnnnn 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  42563069 aataatagcaatactaggagaaattacatcaaaagtacttcctgaagcatgggataaggctgctcatgtgagagcatgagcgctaccgtttatttatttt 42563168  T
Q  159 nnn-ggttaccgggctaataaaacggaaagagaccaacagaaacaaacgagnnnnnnngtgttcttcaattttgttcaataacaaaaggagctatgcaaa 257  Q
        |||||||||| ||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||    
T  42563169 ttttggttaccgggttaataaaacggaaagagaccaacagaaacaaacgagaaaaaaagtgttgttcaattttgttcaataacaaaaggagctatgcaaa 42563268  T
Q  258 aaattaattccacttgaagatgaatacataccaagaaatatgcactatagtaagagccttgttttt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42563269 aaattaattccacttgaagatgaatacataccaagaaatatgcactatagtaagagccttgttttt 42563334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2854393 - 2854446
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2854393 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 2854446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2852943 - 2852890
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  2852943 ttcagggacgaaattgaccgattttttaaaattcaaggacgaatttgaggtatt 2852890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17574375 - 17574313
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataa 63  Q
    |||||||||| | ||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  17574375 ttcagggacgaatttggccgattttttaaaattcaaggacgaatttgaggtattagtcaataa 17574313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 21843035 - 21843077
Alignment:
Q  12 aattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21843035 aattgaccgatttttcaaaattcaaggacgaatttgaggtatt 21843077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24541279 - 24541337
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  24541279 ttcagggacgaaattggccgatttttcaaaattcaatgacgaatttgaggtattagtca 24541337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30463957 - 30463904
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  30463957 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtatt 30463904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40782243 - 40782301
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  40782243 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtattagtca 40782301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2179844 - 2179791
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| ||||||||||||| |||||||||||||    
T  2179844 ttcagggacgaatttgaccgattttttaaaattcaaggacaaatttgaggtatt 2179791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17577967 - 17578020
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| | ||| | |||||||||||||||||||||||||||||||||||||    
T  17577967 ttcagggaagaaatgggccgatttttcaaaattcaaggacgaatttgaggtatt 17578020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28822122 - 28822175
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | |||||| |||||| |||||||||||||||||||||||||||    
T  28822122 ttcagggacgaatttgacctatttttaaaaattcaaggacgaatttgaggtatt 28822175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29620195 - 29620142
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  29620195 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtatt 29620142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34328859 - 34328912
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||| ||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  34328859 ttcatggacgaatttgaccgatttttgaaaattcaaggacgaatttgaggtatt 34328912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36057680 - 36057733
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  36057680 ttcagggacgaatttggccgatttttgaaaattcaaggacgaatttgaggtatt 36057733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40780607 - 40780554
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  40780607 ttcagggacgaaattgtccgatttttcaaaattcaaggactattttgaggtatt 40780554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42471605 - 42471552
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  42471605 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtatt 42471552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42473674 - 42473727
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  42473674 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtatt 42473727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 8539713 - 8539674
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  8539713 gatttttcaaaattcaaggacgaatttgaggtattagtca 8539674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12738768 - 12738827
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||| ||| | ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  12738768 ttcaggtacgaatttggccgattttttaaaattcaaggacgaatttgaggtattagtcaa 12738827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12801591 - 12801650
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||| ||| | ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  12801591 ttcaggtacgaatttggccgattttttaaaattcaaggacgaatttgaggtattagtcaa 12801650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7269478 - 7269536
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||  ||||||||| ||||||||| ||||||||||||||||| ||||    
T  7269478 ttcagggacgaaattagccgattttttaaaattcaaagacgaatttgaggtattagtca 7269536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8541303 - 8541356
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| ||||||||| |||||||||||||||||    
T  8541303 ttcagggacgaatttggccgattttttaaaattcaatgacgaatttgaggtatt 8541356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29621848 - 29621901
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||| ||| | |||||||||||    
T  29621848 ttcagggacgaaattggccgatttttcaaaattcaatgactattttgaggtatt 29621901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 20700318 - 20700258
Alignment:
Q  59 aataatagcaatactaggagaaattacatcaaaagtacttcctgaagcatgggataaggct 119  Q
    |||| ||||||||| |  || |||||||||||||||||| | |||||||||||||||||||    
T  20700318 aatagtagcaatacaaaaaggaattacatcaaaagtactgcgtgaagcatgggataaggct 20700258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 7267882 - 7267847
Alignment:
Q  19 cgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| |||||||||||||||||||||||||||    
T  7267882 cgattttttaaaattcaaggacgaatttgaggtatt 7267847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 14810426 - 14810360
Alignment:
Q  80 aattacatcaaaagtacttcctgaagcatgggataaggctgctcatgtgagagcatgagcgctaccg 146  Q
    |||||||||||||||| |   ||||||||| ||||||||| ||| ||  ||||||||||||||||||    
T  14810426 aattacatcaaaagtattgtgtgaagcatgagataaggcttctcgtgcaagagcatgagcgctaccg 14810360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 28813827 - 28813859
Alignment:
Q  29 aaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||||||||||||||||||| ||||||    
T  28813827 aaattcaaggacgaatttgaggtattagtcaat 28813859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26223644 - 26223585
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26223644 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtattagtcaa 26223585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33602711 - 33602764
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33602711 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 33602764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46583623 - 46583681
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46583623 ttcagggacaaaattgaccgatttttcaaaattcaaggacgaatttgaggtattagtca 46583681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8169600 - 8169653
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  8169600 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 8169653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25278435 - 25278496
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaata 62  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  25278435 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtattagtcaata 25278496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34776626 - 34776573
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  34776626 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 34776573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9120096 - 9120036
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  9120096 ttcagggacgaaattgaccgatttttcaaaattcaaggactattttgaggtattagtcaat 9120036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2869636 - 2869583
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  2869636 ttcagggacgaatttgaccgatttttgaaaattcaaggacgaatttgaggtatt 2869583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4854467 - 4854414
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  4854467 ttcagggacgaaattgaacgatttttcaaaattcaaggacgaatttgaagtatt 4854414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4856033 - 4856094
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaata 62  Q
    |||||||||| | ||| ||||||||| ||||||||||||||||||||||||||| |||||||    
T  4856033 ttcagggacgtatttggccgattttttaaaattcaaggacgaatttgaggtattagtcaata 4856094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6816922 - 6816869
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  6816922 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtatt 6816869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8167999 - 8167946
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  8167999 ttcagagacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 8167946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 25276788 - 25276735
Alignment:
Q  12 aattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataata 65  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  25276788 aattggccgatttttcaaaattcaaggacgaatttgaggtattagtcaaaaata 25276735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37344399 - 37344346
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  37344399 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtatt 37344346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46582067 - 46582014
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  46582067 ttcagggacgaaattggccgatttttcaaaattcaaggacaaatttgaggtatt 46582014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50554220 - 50554167
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  50554220 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtatt 50554167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27089311 - 27089371
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||| ||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  27089311 ttcaaggacgaaatttgccgatttttcaaaattcaaggacgaatttgaggtattagtcaat 27089371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31236876 - 31236817
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||  | ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  31236876 ttcagggacaaatttgaccgattttttaaaattcaaggacgaatttgaggtattagtcaa 31236817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33599244 - 33599191
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||| ||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  33599244 ttcaaggacgaatttgcccgatttttcaaaattcaaggacgaatttgaggtatt 33599191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34778205 - 34778258
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  34778205 ttcagggacgtatttggccgattttttaaaattcaaggacgaatttgaggtatt 34778258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37345994 - 37346047
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| | |||||  ||||||||||||||||||||||||||||||||||||    
T  37345994 ttcagggatgaaattggtcgatttttcaaaattcaaggacgaatttgaggtatt 37346047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47013149 - 47013202
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  47013149 ttcagggacgaaattgtccgatttttcaaaattcaaggactattttgaggtatt 47013202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27087340 - 27087281
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||  | ||||||||||||| |||||| |||||||||||||||||||| |||||    
T  27087340 ttcagggacaaatttgaccgattttttaaaatttaaggacgaatttgaggtattagtcaa 27087281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45045006 - 45044947
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||| | | |||| |||||| ||||||||||||||||||||||||||| |||||    
T  45045006 ttcagggacgaattggaccaattttttaaaattcaaggacgaatttgaggtattagtcaa 45044947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 9121738 - 9121788
Alignment:
Q  4 agggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  9121738 agggacgaaattggccgatttttcaaaattcaaggactattttgaggtatt 9121788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33599275 - 33599229
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttg 47  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||||    
T  33599275 ttcatggacgaatttgaccgatttttcaaaattcaaggacgaatttg 33599229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1442607 - 1442554
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||| | | |||||||||    
T  1442607 ttcagggacgaaattggccgatttttcaaaattcaaggactattgtgaggtatt 1442554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 6818762 - 6818803
Alignment:
Q  18 ccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  6818762 ccgattttttaaaattcaaggacgaatttgaggtattagtca 6818803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47011513 - 47011460
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||| ||||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  47011513 ttcatggacgaaattgtccgatttttcaaaattcaaggactattttgaggtatt 47011460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 52641945 - 52641892
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| | ||||||| |||||||||||||||||||||||||||    
T  52641945 ttcagggacgaatttggctgatttttgaaaattcaaggacgaatttgaggtatt 52641892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25278911 - 25278851
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||  | ||||| ||||||| |||||||||||| |||||||||||||| ||||||    
T  25278911 ttcagggacaaatttgactgatttttgaaaattcaaggatgaatttgaggtattagtcaat 25278851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31238562 - 31238622
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||  | ||| ||||||||| ||||||||||||| ||||||||||||| ||||||    
T  31238562 ttcagggacaaatttggccgattttttaaaattcaaggacaaatttgaggtattagtcaat 31238622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 25279039 - 25279078
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  25279039 gatttttgaaaattcaaggacgaatttgaggtattagtca 25279078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3013543 - 3013601
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||| ||||| | ||||| ||| ||| ||||||||||||||||||||||||||| ||||    
T  3013543 ttcatggacgaatttgactgatgttttaaaattcaaggacgaatttgaggtattagtca 3013601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37088168 - 37088226
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||| ||| | ||| ||||||||| |||||||||||| |||||||||||||| ||||    
T  37088168 ttcaggaacgaatttggccgattttttaaaattcaaggaagaatttgaggtattagtca 37088226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1444213 - 1444266
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||  ||||| |||||||||||||||| |||||| | |||||||||||    
T  1444213 ttcagggacaaaattggccgatttttcaaaatttaaggactattttgaggtatt 1444266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2871108 - 2871161
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||  ||||||||| |||||||||||||||||||||| ||||    
T  2871108 ttcagggacgaatttagccgatttttaaaaattcaaggacgaatttgagatatt 2871161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3011912 - 3011859
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||| ||| | ||||| ||||||| |||||| ||||||||||||||||||||    
T  3011912 ttcaggaacgaatttgactgattttttaaaatttaaggacgaatttgaggtatt 3011859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 52643682 - 52643735
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | || || ||||||| |||||| ||||||||||||||||||||    
T  52643682 ttcagggacgaatttaactgatttttaaaaatttaaggacgaatttgaggtatt 52643735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29237208 - 29237150
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29237208 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtattagtca 29237150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33707263 - 33707210
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33707263 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 33707210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35509271 - 35509210
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaata 62  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  35509271 ttcagggacgaaattgaccgatttttcaaaattcaaggactaatttgaggtattagtcaata 35509210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33762745 - 33762803
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  33762745 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtattagtca 33762803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38548863 - 38548921
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  38548863 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtattagtca 38548921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 601736 - 601789
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  601736 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 601789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8608294 - 8608241
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  8608294 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttaaggtatt 8608241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27691211 - 27691158
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  27691211 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 27691158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27692869 - 27692922
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  27692869 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 27692922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35510851 - 35510904
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35510851 ttcaaggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 35510904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 29239222 - 29239272
Alignment:
Q  4 agggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  29239222 agggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 29239272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13106861 - 13106802
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||| | ||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  13106861 ttcagggatgaaattggccgatttttcaaaattcaaggacgaatttaaggtattagtcaa 13106802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13284027 - 13284089
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataa 63  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||| ||||||  |||||||    
T  13284027 ttcagggacaaaattggccgatttttcaaaattcaaggacgaatttgtggtattaatcaataa 13284089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15308293 - 15308351
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  15308293 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtattagtca 15308351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15488662 - 15488720
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  15488662 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtattagtca 15488720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33761126 - 33761068
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| ||||    
T  33761126 ttcagggacgaaattggctgatttttcaaaattcaaagacgaatttgaggtattagtca 33761068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 600817 - 600764
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||| ||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  600817 ttcaaggacgaaattggctgatttttcaaaattcaaggacgaatttgaggtatt 600764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13282535 - 13282482
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  13282535 ttcagggacgaatttggccgattttttaaaattcaaggacgaatttgaggtatt 13282482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27404267 - 27404214
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  27404267 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtatt 27404214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34681098 - 34681151
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  34681098 ttcagggacgaatttggccgatttttgaaaattcaaggacgaatttgaggtatt 34681151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42943458 - 42943511
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  42943458 ttcagggacgaatttggccgattttttaaaattcaaggacgaatttgaggtatt 42943511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8609874 - 8609933
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||| | ||| ||||||||| |||||||||| |||||||||||||||| |||||    
T  8609874 ttcagggacgaatttggccgattttttaaaattcaagaacgaatttgaggtattagtcaa 8609933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5036502 - 5036449
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||| ||||||| |||||| ||||||||||||||||||||    
T  5036502 ttcagggacgaatttgacggattttttaaaatttaaggacgaatttgaggtatt 5036449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26238783 - 26238730
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| | ||||||| |||||||||||||||||||||||||||    
T  26238783 ttcagggacgaatttggctgatttttgaaaattcaaggacgaatttgaggtatt 26238730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33708891 - 33708943
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||    
T  33708891 ttcagggacgaaattgaccgtttttt-aaaattcaaggatgaatttgaggtatt 33708943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42941831 - 42941778
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| | ||||||| |||||||||||||||||||||||||||    
T  42941831 ttcagggacgaatttggctgattttttaaaattcaaggacgaatttgaggtatt 42941778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 5038107 - 5038157
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataata 65  Q
    ||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||    
T  5038107 ttgaccgattttttaaaattcaa-gacgaatttgaggtattagtcaaaaata 5038157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 13486200 - 13486247
Alignment:
Q  15 tgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaata 62  Q
    |||||||||||| |||||||||| || ||||||||||||| |||||||    
T  13486200 tgaccgatttttaaaaattcaagcacaaatttgaggtattagtcaata 13486247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 22273940 - 22273986
Alignment:
Q  18 ccgatttttcaaaattcaaggacgaatttgaggtattggtcaataat 64  Q
    ||||||||| ||||||||||||| ||||||||||||| ||| |||||    
T  22273940 ccgattttttaaaattcaaggacaaatttgaggtattagtctataat 22273986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38547285 - 38547227
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||| ||||| | ||| ||||||||| |||||||||||||||| |||||||||| ||||    
T  38547285 ttcatggacgtatttggccgattttttaaaattcaaggacgaacttgaggtattagtca 38547227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 41825750 - 41825784
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  41825750 gatttttgaaaattcaaggacgaatttgaggtatt 41825784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13108423 - 13108476
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||  ||||||||| |||||||||||||||||||||| ||||    
T  13108423 ttcagggacgtatttagccgattttttaaaattcaaggacgaatttgagttatt 13108476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13484602 - 13484553
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgagg 50  Q
    |||||||||| | ||| ||||||||| ||||||||| |||||||||||||    
T  13484602 ttcagggacgaatttggccgatttttgaaaattcaatgacgaatttgagg 13484553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27406984 - 27407037
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||| ||||| ||||| || |||||||||||||||||||| | |||||||||||    
T  27406984 ttcatggacgaaattggccaatttttcaaaattcaaggactattttgaggtatt 27407037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 43262188 - 43262228
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    ||||||| |||||| |||||||||||||||||||| |||||    
T  43262188 gatttttgaaaatttaaggacgaatttgaggtattagtcaa 43262228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51013918 - 51013976
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51013918 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtattagtca 51013976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 319330 - 319277
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  319330 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 319277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33264439 - 33264386
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33264439 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 33264386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43507224 - 43507166
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  43507224 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtattagtca 43507166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4173772 - 4173825
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  4173772 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 4173825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43508685 - 43508738
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  43508685 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 43508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43519481 - 43519428
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  43519481 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 43519428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 833280 - 833218
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataa 63  Q
    |||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||||||    
T  833280 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtattagtcaataa 833218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49524765 - 49524823
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  49524765 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtattagtca 49524823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 320943 - 320990
Alignment:
Q  12 aattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  320943 aattggccgatttttcaaaattcaaggacgaatttgaggtattagtca 320990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35401806 - 35401747
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||| | ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  35401806 ttcagggacgaatttggccgattttttaaaattcaaggacgaatttgaggtattagtcaa 35401747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5439679 - 5439737
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  5439679 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtattagtca 5439737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 29575428 - 29575514
Alignment:
Q  59 aataatagcaatactaggagaaattacatcaaaagtacttcctgaagcatgggataaggctgctcatgtgagagcatgagcgctacc 145  Q
    |||| ||||||||| |  || ||||||| |||||||||| | ||||||||||||||||||| ||| ||  |||||||||||||||||    
T  29575428 aatagtagcaatacaaaaaggaattacaacaaaagtactgcgtgaagcatgggataaggcttctcgtgcaagagcatgagcgctacc 29575514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4169743 - 4169690
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| |||| |||||| | ||||||||||||||||||||||||||||||||||    
T  4169743 ttcagagacgaaattgatcaatttttcaaaattcaaggacgaatttgaggtatt 4169690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 11254170 - 11254118
Alignment:
Q  7 gacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  11254170 gacggatttggccgatttttaaaaattcaaggacgaatttgaggtatttgtca 11254118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5437868 - 5437810
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||  ||||||||||||||||||||||| | ||||||||||| ||||    
T  5437868 ttcagggacgaaatttgccgatttttcaaaattcaaggactattttgaggtattagtca 5437810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 41761817 - 41761866
Alignment:
Q  5 gggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  41761817 gggacgaatttggccgatttttgaaaattcaaggacgaatttgaggtatt 41761866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48645312 - 48645259
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||| ||||| | ||||| ||||||| |||||||||||||||||||||||||||    
T  48645312 ttcatggacgaatttgactgatttttgaaaattcaaggacgaatttgaggtatt 48645259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 51011970 - 51011930
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  51011970 ttgaccgattttttaaaattcaaggacgaatttgagatatt 51011930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39345621 - 39345574
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttga 48  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||    
T  39345621 ttcagggacgaatttggccgattttttaaaattcaaggacgaatttga 39345574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 835074 - 835132
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||  |||||  |||||||||||||||||||||| | ||||||||||| ||||    
T  835074 ttcagggacaaaattggtcgatttttcaaaattcaaggactattttgaggtattagtca 835132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 41781596 - 41781538
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||  | ||||||||||||| |||||||||| || ||||||||||||| ||||    
T  41781596 ttcagggacaaatttgaccgattttttaaaattcaagaacaaatttgaggtattagtca 41781538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 48813825 - 48813791
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  48813825 gatttttgaaaattcaaggacgaatttgaggtatt 48813791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33266042 - 33266095
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||| ||| ||||  |||||||||||||||||||| ||||||||||| ||||    
T  33266042 ttcaggaacgaaattagccgatttttcaaaattcaagaacgaatttgagatatt 33266095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 43521152 - 43521193
Alignment:
Q  12 aattgaccgatttttcaaaattcaaggacgaatttgaggtat 53  Q
    ||||||| |||||||||||||||||| || ||||||||||||    
T  43521152 aattgactgatttttcaaaattcaagaacaaatttgaggtat 43521193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 20820029 - 20819989
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| ||||||| |||||||||||||||| ||||||||||    
T  20820029 ttgactgatttttgaaaattcaaggacgaagttgaggtatt 20819989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 49523164 - 49523128
Alignment:
Q  18 ccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  49523164 ccgattttttaaaattcaatgacgaatttgaggtatt 49523128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3150309 - 3150247
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataa 63  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3150309 ttcagggacgaaattgaccgatttttcaaaattcaaggacgaatttgaggtattagtctataa 3150247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 53187799 - 53187739
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  53187799 ttcagggacgaaattgaccgatttttcaaaattcaaggacaaatttgaggtattagtcaat 53187739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 53094305 - 53094363
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  53094305 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtattagtca 53094363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2379015 - 2379068
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  2379015 ttcagggacgaaattgaccgattttttaaaattcaaggacgaatttgaggtatt 2379068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38193542 - 38193595
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  38193542 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 38193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41979384 - 41979437
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  41979384 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 41979437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46308864 - 46308811
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  46308864 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 46308811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 46310468 - 46310521
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  46310468 ttcagggacgaaattgaccgatttttcaaaattcaaagacgaatttgaggtatt 46310521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 54900106 - 54900159
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  54900106 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 54900159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 54898494 - 54898435
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  54898494 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtattagtcaa 54898435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28626468 - 28626415
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||||||||||||||||||||||||||| | |||||||||||    
T  28626468 ttcagggacgaaattgaccgatttttcaaaattcaaggactattttgaggtatt 28626415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 46611335 - 46611388
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  46611335 ttcagggacgaaattgacaaatttttcaaaattcaaggacgaatttgaggtatt 46611388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 46609206 - 46609146
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||| |||| ||||||    
T  46609206 ttcagggacgaaattggccgatttttcaaaattcaagaacgaatttgagatattagtcaat 46609146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2660269 - 2660218
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggta 52  Q
    |||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  2660269 ttcagggacgaaattggtcgatttttcaaaattcaaggacgaatttgaggta 2660218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30598394 - 30598336
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||  | ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  30598394 ttcagggacaaatttgaccgatttttgaaaattcaaggacgaatttgaggtattagtca 30598336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2226239 - 2226292
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  2226239 ttcagggacgaatttggccgattttttaaaattcaaggacgaatttgaggtatt 2226292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7884931 - 7884984
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  7884931 ttcagggacgtatttggccgattttttaaaattcaaggacgaatttgaggtatt 7884984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38191952 - 38191899
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| || ||||||||||||| ||||||||||||||||||||    
T  38191952 ttcagggacgaaattggccaatttttcaaaatttaaggacgaatttgaggtatt 38191899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41977807 - 41977754
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  41977807 ttcagggacgtatttggccgattttttaaaattcaaggacgaatttgaggtatt 41977754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 44795922 - 44795975
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||| ||| ||||  |||||||||||||||||||||||||||||||||||||    
T  44795922 ttcaggaacgaaattagccgatttttcaaaattcaaggacgaatttgaggtatt 44795975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 53190846 - 53190899
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  53190846 ttcagggacgaatttggccgattttttaaaattcaaggacgaatttgaggtatt 53190899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2661940 - 2661992
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtat 53  Q
    |||| ||||| |||||  |||||||||||||||||||||||||||||||||||    
T  2661940 ttcacggacgaaattggtcgatttttcaaaattcaaggacgaatttgaggtat 2661992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 43765181 - 43765141
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  43765181 ttgaccgatttttgaaaattcaaggacgaatttgaggtatt 43765141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 611254 - 611316
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataa 63  Q
    |||||||||| | ||| | ||||||| ||||||||||||||||||||||||||| ||| ||||    
T  611254 ttcagggacgaatttggctgattttttaaaattcaaggacgaatttgaggtattagtctataa 611316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 7883382 - 7883332
Alignment:
Q  4 agggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| ||||| ||||||||||||||||||| |||||| ||||||||||    
T  7883382 agggacgaaattggccgatttttcaaaattcaaagacgaaattgaggtatt 7883332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27899168 - 27899226
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||| ||||| | ||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  27899168 ttcaaggacgaatttggccgattttttaaaattcaaggacgaatttgaggtattagtca 27899226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44794264 - 44794207
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||| | ||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  44794264 ttcagggatgaaattggccgatttt-caaaattcaaggacgaatttgaggtattagtca 44794207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23291627 - 23291574
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| ||||||||| ||||||||||||||||||| |||||||    
T  23291627 ttcagggacgaatttggccgattttttaaaattcaaggacgaatttaaggtatt 23291574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35903882 - 35903829
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| | ||||| | ||||||||||||||||||||| |||||||||||||    
T  35903882 ttcagggatgaaattggctgatttttcaaaattcaaggacaaatttgaggtatt 35903829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 44268021 - 44267980
Alignment:
Q  18 ccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  44268021 ccgatttttgaaaattcaaggacgaatttgaggtattagtca 44267980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 53092680 - 53092627
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| || ||||||||||||| || |||||||||||||||||    
T  53092680 ttcagggacgaaattggccaatttttcaaaatttaaagacgaatttgaggtatt 53092627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 42282518 - 42282558
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  42282518 ttgactgatttttgaaaattcaaggacgaatttgaggtatt 42282558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 46112527 - 46112491
Alignment:
Q  18 ccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||||| |||||||||||||||||||||||||||    
T  46112527 ccgattttttaaaattcaaggacgaatttgaggtatt 46112491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 17517018 - 17517052
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttga 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  17517018 ttgaccgatttttgaaaattcaaggacgaatttga 17517052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 21348780 - 21348722
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||| ||||| | ||| ||||||||| ||||||||||||| ||||||||||||| ||||    
T  21348780 ttcaaggacgaatttggccgattttttaaaattcaaggacaaatttgaggtattagtca 21348722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 600764 - 600723
Alignment:
Q  19 cgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||| |||||||||||| |||||||||||||| |||||    
T  600764 cgattttttaaaattcaaggatgaatttgaggtattagtcaa 600723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3152305 - 3152358
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| | ||||| |||||||||||||||| |||||  |||||||||||||    
T  3152305 ttcagggatgaaattggccgatttttcaaaatttaaggataaatttgaggtatt 3152358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35905799 - 35905843
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatt 45  Q
    |||||||||| | ||||||||||||| |||||||||||| |||||    
T  35905799 ttcagggacgaatttgaccgattttttaaaattcaaggatgaatt 35905843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 51684648 - 51684608
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    ||||||| |||||||||||||||||||||| |||| |||||    
T  51684648 gatttttgaaaattcaaggacgaatttgagatattagtcaa 51684608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27666132 - 27666192
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  27666132 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtattagtcaat 27666192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29994963 - 29994910
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  29994963 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 29994910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29996581 - 29996634
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  29996581 ttcagggacaaaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 29996634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35403651 - 35403710
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  35403651 ttcagggacgaaattggccgattttttaaaattcaaggacgaatttgaggtattagtcaa 35403710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 56387 - 56334
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  56387 ttcagggacgaaatttgccgatttttcaaaattcaaggacgaatttgaggtatt 56334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 78046 - 78099
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  78046 ttcagggacgaaattggccgatttttcaaaattcaaagacgaatttgaggtatt 78099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 39857702 - 39857649
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  39857702 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtatt 39857649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 20479751 - 20479809
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  20479751 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtattagtca 20479809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23904640 - 23904587
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| |||| | ||||||||||||| |||||||||||||||||||||||||||    
T  23904640 ttcagagacgaatttgaccgattttttaaaattcaaggacgaatttgaggtatt 23904587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27664487 - 27664434
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||  ||||| ||||||||||||||||||||||| |||||||||||||    
T  27664487 ttcagggacaaaattggccgatttttcaaaattcaaggactaatttgaggtatt 27664434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35402026 - 35401973
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||| ||||    
T  35402026 ttcagggacgaaattagccgatttttcaaaattcaaggacgaatttgagatatt 35401973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 35691471 - 35691431
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  35691471 ttgaccgatttttgaaaattcaaggacgaatttgaggtatt 35691431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13169715 - 13169773
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||  | ||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  13169715 ttcagggacaaatttggccgatttttgaaaattcaaggacgaatttgaggtattagtca 13169773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 6605442 - 6605491
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataa 63  Q
    ||||||||||||| ||||||||||||| |||||||||||||  |||||||    
T  6605442 ttgaccgattttttaaaattcaaggacaaatttgaggtattaatcaataa 6605491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20478099 - 20478046
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||| ||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  20478099 ttcaggtacgaaattggccgatttttcaaaattcaaggactattttgaggtatt 20478046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24226638 - 24226585
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||| ||||| | ||| ||||||||| |||||||||||||||||||||||||||    
T  24226638 ttcaaggacgaatttggccgatttttgaaaattcaaggacgaatttgaggtatt 24226585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37113998 - 37113945
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| | | |||||| |||||| |||||||||||||||||||||||||||    
T  37113998 ttcagggatgaatttgaccaattttttaaaattcaaggacgaatttgaggtatt 37113945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38474210 - 38474263
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| ||||||| ||||| |||||||||||||    
T  38474210 ttcagggacgaatttgaccgatttttaaaaattcgaggactaatttgaggtatt 38474263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39859296 - 39859349
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||  | ||| ||||||||| |||||||||||||||||||||||||||    
T  39859296 ttcagggactaatttggccgattttttaaaattcaaggacgaatttgaggtatt 39859349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 47384331 - 47384298
Alignment:
Q  21 atttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  47384331 atttttcaaaattcaaggacgaatttgaggtatt 47384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 45361319 - 45361367
Alignment:
Q  12 aattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||| |||||| |||||||||||| |||||||||||||| |||||    
T  45361319 aattgacccattttttaaaattcaaggaagaatttgaggtattagtcaa 45361367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 48227986 - 48228026
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  48227986 ttgaccgattttttaaaattcaaagacgaatttgaggtatt 48228026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 13010177 - 13010264
Alignment:
Q  59 aataatagcaatactaggagaaattacatcaaaagtacttcctgaagcatgggataaggctgctcatgtgagagcatgagcgctaccg 146  Q
    |||| ||||||||| |  || |||||||||||||||||| | |||| ||||||||||| || ||| ||  |||||||| |||||||||    
T  13010177 aatagtagcaatacaaaaaggaattacatcaaaagtactgcgtgaaacatgggataagacttctcgtgcaagagcatgggcgctaccg 13010264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22155879 - 22155941
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataa 63  Q
    |||| ||||| | ||| ||||||||| |||||||||||||||| || ||||||| ||||||||    
T  22155879 ttcatggacgaatttggccgatttttgaaaattcaaggacgaagtttaggtattagtcaataa 22155941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22211794 - 22211856
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataa 63  Q
    |||| ||||| | ||| ||||||||| |||||||||||||||| || ||||||| ||||||||    
T  22211794 ttcatggacgaatttggccgatttttgaaaattcaaggacgaagtttaggtattagtcaataa 22211856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 23906302 - 23906352
Alignment:
Q  4 agggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| | ||| ||||||||| |||||||||||| ||||||||||||||    
T  23906302 agggacgaatttggccgattttttaaaattcaaggaggaatttgaggtatt 23906352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45359393 - 45359331
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataa 63  Q
    |||| ||||||| ||||||||||||| |||||||| |||| ||||| ||||||| ||| ||||    
T  45359393 ttcaaggacggatttgaccgattttttaaaattcatggacaaatttaaggtattagtccataa 45359331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 46437145 - 46437111
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  46437145 gatttttgaaaattcaaggacgaatttgaggtatt 46437111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47386276 - 47386334
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||| ||||| | ||||| ||||||| |||||| |||||||||||||||||||| ||||    
T  47386276 ttcaaggacgaatttgactgattttttaaaattaaaggacgaatttgaggtattagtca 47386334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 34249792 - 34249748
Alignment:
Q  162 ggttaccgggctaataaaacggaaagagaccaacagaaacaaacga 207  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||    
T  34249792 ggttacagggctaataaa-cggaaagaaaccaacagaaacaaacga 34249748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 34693182 - 34693145
Alignment:
Q  80 aattacatcaaaagtacttcctgaagcatgggataagg 117  Q
    |||||||||||||||||| | |||||||||||||||||    
T  34693182 aattacatcaaaagtactgcgtgaagcatgggataagg 34693145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37115593 - 37115646
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||| ||| | ||||| ||||||| ||||||||| |||||||||||||||||    
T  37115593 ttcaggaacgaatttgactgattttttaaaattcaatgacgaatttgaggtatt 37115646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38549604 - 38549551
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||| | ||||||| ||||||||||||||||||| |||||||    
T  38549604 ttcagggacgaacttggctgatttttgaaaattcaaggacgaatttaaggtatt 38549551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 34775042 - 34775002
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||||||||| ||||||||| |||||||||||| ||||    
T  34775042 ttgaccgattttttaaaattcaaagacgaatttgagatatt 34775002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 35693434 - 35693466
Alignment:
Q  27 caaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||||||||||||||||||||| ||||    
T  35693434 caaaattcaaggacgaatttgaggtattagtca 35693466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14375 - 14436
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaata 62  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||||||    
T  14375 ttcagggacgaaatttgccgatttttcaaaattcaaggacgaatttgaggtattagtcaata 14436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3351 - 3291
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  3351 ttcagggacaaaattggccgatttttcaaaattcaaggacgaatttgaggtattagtcaat 3291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4523 - 4463
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  4523 ttcagggacaaaattggccgatttttcaaaattcaaggacgaatttgaggtattagtcaat 4463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 14387406 - 14387353
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14387406 ttcagggacgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 14387353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 16764643 - 16764703
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  16764643 ttcagggacgaaattggccgatttctcaaaattcaaggacgaatttgaggtattagtcaat 16764703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16763133 - 16763075
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  16763133 ttcagggacgaatttgaccgatttttaaaaattcaaggacgaatttgaggtattagtca 16763075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16376793 - 16376734
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||| | ||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  16376793 ttcagggacgaatttgaccgattttttaaaattcaaagacgaatttgaggtattagtcaa 16376734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6783421 - 6783363
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| ||||    
T  6783421 ttcagggacgaaattgaccgattttttaaaattcaaggactattttgaggtattagtca 6783363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19906739 - 19906686
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||| |||||||    
T  19906739 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttaaggtatt 19906686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24205655 - 24205602
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||| | |||||||||||    
T  24205655 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtatt 24205602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 39663211 - 39663158
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||| |||||||    
T  39663211 ttcagggacgaatttgaccgatttttaaaaattcaaggacgaattttaggtatt 39663158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40561910 - 40561963
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  40561910 ttcagagacgaaattggccgatttttcaaaattcaaagacgaatttgaggtatt 40561963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 37020554 - 37020502
Alignment:
Q  12 aattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataat 64  Q
    ||||||||||||||||||||||||||||| | ||||||||||| |||| ||||    
T  37020554 aattgaccgatttttcaaaattcaaggactattttgaggtattagtcattaat 37020502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 6786071 - 6786126
Alignment:
Q  4 agggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    ||||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  6786071 agggacgaaattggccgatttttcaaaattcaaggactattttgaggtattagtca 6786126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37022217 - 37022280
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataat 64  Q
    |||||||||| |||||  |||||||||||||||||||||| | ||||||||||| |||| ||||    
T  37022217 ttcagggacgaaattggtcgatttttcaaaattcaaggactattttgaggtattagtcattaat 37022280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 42517603 - 42517556
Alignment:
Q  13 attgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  42517603 attggccgatttttaaaaattcaaggacgaatttgaggtattagtcaa 42517556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2577512 - 2577570
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| |||||  |||||||||||||||||||||| | ||||||||||| ||||    
T  2577512 ttcagggacgaaattggacgatttttcaaaattcaaggactattttgaggtattagtca 2577570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 14389171 - 14389229
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| | ||| ||||||||| ||||||||| ||||||||||||||||| ||||    
T  14389171 ttcagggacgaatttggccgatttttgaaaattcaatgacgaatttgaggtattagtca 14389229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 39664839 - 39664893
Alignment:
Q  5 gggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||| | ||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  39664839 gggacgaatttggccgattttttaaaattcaaggacgaatttgaggtattagtca 39664893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 2766978 - 2766933
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||    
T  2766978 ttgaccgatttttaaaaattcaaggacgaatttgagctattagtca 2766933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17696263 - 17696210
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| | | ||| ||||||||| |||||||||||||||||||||||||||    
T  17696263 ttcagggatgaatttggccgatttttgaaaattcaaggacgaatttgaggtatt 17696210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24208129 - 24208182
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||||||  | |||||||||||    
T  24208129 ttcagggacgaaattggccgatttttcaaaattcaaggagtattttgaggtatt 24208182  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44709832 - 44709892
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    ||||||| || | ||| ||| ||||| ||||||||||||||||||||||||||| ||||||    
T  44709832 ttcagggccgaatttggccggttttttaaaattcaaggacgaatttgaggtattagtcaat 44709892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6799440 - 6799493
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||| ||||| | ||| ||||||||| |||||||||||||||||||||| ||||    
T  6799440 ttcatggacgaatttgtccgatttttaaaaattcaaggacgaatttgagatatt 6799493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34400371 - 34400318
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| | | ||| ||||||||| |||||||||||| ||||||||||||||    
T  34400371 ttcagggatgaatttggccgatttttgaaaattcaaggatgaatttgaggtatt 34400318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 42519313 - 42519346
Alignment:
Q  21 atttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||| |||||||||||||||||||||||||||    
T  42519313 attttttaaaattcaaggacgaatttgaggtatt 42519346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 19908355 - 19908387
Alignment:
Q  22 tttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| |||||||||||||||||||||||||||    
T  19908355 ttttttaaaattcaaggacgaatttgaggtatt 19908387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40560280 - 40560220
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaat 61  Q
    |||||||||| | ||| | ||||||| ||||||||| ||||||||||| ||||| ||||||    
T  40560280 ttcagggacgaatttggctgattttttaaaattcaaagacgaatttgaagtattagtcaat 40560220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32516934 - 32516870
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaataata 65  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  32516934 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtattagtcaaaaata 32516870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13613649 - 13613707
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  13613649 ttcagggacgaatttgaccgatttttcaaaattcaaggacgaatttaaggtattagtca 13613707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32455958 - 32456011
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||||||||||||||||||||||||||| | |||||||||||    
T  32455958 ttcagggacgaaattgaccgatttttcaaaattcaaggactattttgaggtatt 32456011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32518529 - 32518582
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| | ||||| |||||||||||||||||||||||||||||||||||||    
T  32518529 ttcagggatgaaattggccgatttttcaaaattcaaggacgaatttgaggtatt 32518582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 18645145 - 18645188
Alignment:
Q  11 gaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  18645145 gaattgtccgatttttcaaaattcaaggacgaatttgaggtatt 18645188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3480689 - 3480747
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  3480689 ttcagggacgaaattggccgatttttcaaaattcaaggactattttgaggtattagtca 3480747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11355279 - 11355226
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| |||| | ||||||||||||| |||||||||||||||||||||||||||    
T  11355279 ttcagtgacgaatttgaccgattttttaaaattcaaggacgaatttgaggtatt 11355226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11357226 - 11357279
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||| |||||    
T  11357226 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgatgtatt 11357279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32437197 - 32437144
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||    
T  32437197 ttcagggacgaaattggccgatttttcaaaattcaatgacaaatttgaggtatt 32437144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 9400080 - 9400120
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  9400080 ttgactgatttttcaaaattcaaggacgaatttgaggtatt 9400120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 6902932 - 6902982
Alignment:
Q  4 agggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| | ||||| ||||||| |||||||||||||||||||||||||||    
T  6902932 agggacgaatttgactgatttttgaaaattcaaggacgaatttgaggtatt 6902982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13610747 - 13610689
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||  | |||| |||||||||||||||||||||||||||| ||||||| ||||    
T  13610747 ttcagggacaaatttgatcgatttttcaaaattcaaggacgaatttaaggtattagtca 13610689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32439158 - 32439216
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| | ||||||||||||| ||||||||| ||| ||||||||||||| ||||    
T  32439158 ttcagggacgaatttgaccgattttttaaaattcaatgactaatttgaggtattagtca 32439216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32454305 - 32454247
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||| ||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  32454305 ttcaaggacgaaattggccgatttttcaaaattcaaggactattttgaggtattagtca 32454247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3456805 - 3456766
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggac 40  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  3456805 ttcagggacgaaattggccgatttttcaaaattcaaggac 3456766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7371232 - 7371173
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||  | ||| ||||||||| |||||||||||||||| |||||||||| |||||    
T  7371232 ttcagggaccaatttggccgatttttgaaaattcaaggacgaagttgaggtattagtcaa 7371173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 8605376 - 8605410
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  8605376 gatttttgaaaattcaaggacgaatttgaggtatt 8605410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10568456 - 10568398
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||| ||||| | ||||| ||||||| ||||||||||||||||||||| ||||| ||||    
T  10568456 ttcaaggacgaatttgactgatttttgaaaattcaaggacgaatttgatgtattcgtca 10568398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 10569970 - 10570004
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  10569970 gattttttaaaattcaaggacgaatttgaggtatt 10570004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 21091144 - 21091110
Alignment:
Q  20 gatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  21091144 gatttttgaaaattcaaggacgaatttgaggtatt 21091110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 6899529 - 6899484
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    ||||| ||||||| ||||||||||||| ||||||||||||| ||||    
T  6899529 ttgactgatttttgaaaattcaaggacaaatttgaggtattagtca 6899484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7373025 - 7373078
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | |||||| |||||| |||||||||  ||||||||||||||||    
T  7373025 ttcagggacgaatttgaccaatttttaaaaattcaatcacgaatttgaggtatt 7373078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20525366 - 20525419
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||| | | |||||| |||||| ||||||||| |||||||||||||||||    
T  20525366 ttcagggatgaatttgacctatttttaaaaattcaaagacgaatttgaggtatt 20525419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 21068669 - 21068629
Alignment:
Q  14 ttgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    ||||| |||| || |||||||||||||||||||||||||||    
T  21068669 ttgactgattgttgaaaattcaaggacgaatttgaggtatt 21068629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 54290 - 54348
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtca 59  Q
    |||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  54290 ttcagggacgaaattgaccgatttttcaaaattcaaggactattttgaggtattagtca 54348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1587 - 1640
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||| |||||    
T  1587 ttcagggacgaatttgaccgattttttaaaattcaaggacgaatttgatgtatt 1640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1712 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1712
Description:

Target: scaffold1712; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1039 - 980
Alignment:
Q  1 ttcagggacggaattgaccgatttttcaaaattcaaggacgaatttgaggtattggtcaa 60  Q
    |||||||||| ||||  ||||||||||||||||||||||| | ||||||||||| |||||    
T  1039 ttcagggacgaaatttgccgatttttcaaaattcaaggactattttgaggtattagtcaa 980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 8299 - 8266
Alignment:
Q  21 atttttcaaaattcaaggacgaatttgaggtatt 54  Q
    |||||| |||||||||||||||||||||||||||    
T  8299 attttttaaaattcaaggacgaatttgaggtatt 8266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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