View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_high_24 (Length: 294)
Name: NF7687_high_24
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_high_24 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 2451143 - 2450850
Alignment:
| Q |
1 |
ccaaacccttatgtagcaccatccaccccatgcgcgattcgggacaatgtaaaaacagagcagttaagaagattccgtgtctccatcacgtgaatgttcc |
100 |
Q |
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| T |
2451143 |
ccaaacccttatgtagcaccatccaccccatgcgcgattcgggacaatgtaaaaacagagcagttaagaagattccgtgtctccatcacgtgaatgttcc |
2451044 |
T |
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| Q |
101 |
tccatttctgggacaaagtttattggcaccccattgtgatactgttgcatcaccaaaacagatgctgttgtgcggaaaacttgtgatgccaacaagccac |
200 |
Q |
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| T |
2451043 |
tccatttctgggacaaagtttattggcaccccattgtgatactgttgcatcaccaaaacagatgctgttgtgcggaaatcttgtgatgccaacaagccac |
2450944 |
T |
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| Q |
201 |
caacaggtcctaattctgggcactcgcttctttcaagagcaaagcccaattcaccggctggccttcgacccacaagaaataggttgcagaaatt |
294 |
Q |
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| T |
2450943 |
caacaggtcctaattctgggcactcgcttctttcaagagcaaagcccaattcaccggctggccttcgacccacaagaaataggttgcagaaatt |
2450850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 2462148 - 2461860
Alignment:
| Q |
6 |
cccttatgtagcaccatccaccccatgcgcgattcgggacaatgtaaaaacagagcagttaagaagattccgtgtctccatcacgtgaatgttcctccat |
105 |
Q |
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|||| |||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
2462148 |
ccctgatgtagcaccatccaccccatgcgtgattcgcgacaatgtaataacagagcagttaagaagattctgtgtctccatcacgtcaatgttcctccat |
2462049 |
T |
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| Q |
106 |
ttctgggacaaagtttattggcaccccattgtgatactgttgcatcaccaaaacagatgctgttgtgcggaaaacttgtgatgccaacaagccaccaaca |
205 |
Q |
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| T |
2462048 |
ttctgggacaaaatttattggcaccccattgggatactgttgcatcaccaaaacagatgctgttgtccgaaaatcttgtgatgccaataagccaccaaca |
2461949 |
T |
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| Q |
206 |
ggtcctaattctgggcactcgcttctttcaagagcaaagcccaattcaccggctggccttcgacccacaagaaataggttgcagaaatt |
294 |
Q |
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| T |
2461948 |
ggtcctaattccgggcactcgcttcttttcagagcaaatgccaattcactggttggtcttcgacccacaagaaataggttgcagcaatt |
2461860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 90 - 294
Target Start/End: Complemental strand, 2446287 - 2446083
Alignment:
| Q |
90 |
gtgaatgttcctccatttctgggacaaagtttattggcaccccattgtgatactgttgcatcaccaaaacagatgctgttgtgcggaaaacttgtgatgc |
189 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||| || || |||| ||| |
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| T |
2446287 |
gtgaatgttcctccatttctgggacaaaattcattggcaccccattatgatactgttgcatcaccaaaaccgatgctgttgtggggcaatcttgggatat |
2446188 |
T |
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| Q |
190 |
caacaagccaccaacaggtcctaattctgggcactcgcttctttcaagagcaaagcccaattcaccggctggccttcgacccacaagaaataggttgcag |
289 |
Q |
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||||||||||||||||||||||| ||| |||||||| |||||||| |||||| || |||||||||||| ||||||| ||||||||||||| || |||||| |
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| T |
2446187 |
caacaagccaccaacaggtcctagttccgggcactcccttctttccagagcacaggccaattcaccggttggccttagacccacaagaaacagattgcag |
2446088 |
T |
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| Q |
290 |
aaatt |
294 |
Q |
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|||| |
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| T |
2446087 |
gaatt |
2446083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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