View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_high_29 (Length: 245)
Name: NF7687_high_29
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 14664956 - 14664729
Alignment:
| Q |
1 |
acaaaattgttatatgttttgcaacaatgataaatttaattactgtggtgcagtatccgtcaagttcaagttgaaggagtaccgggttcaatggtgtttg |
100 |
Q |
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| T |
14664956 |
acaaaattgttatctgttttgcaacaatgataaatttaattactgtggtgcagtatccgtcaagttcaagttgaag-agtaccaggttcaatggtgtttg |
14664858 |
T |
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| Q |
101 |
atgttaaaattaatcatggatcaagaaagtataccttgcaatacgacctaaataactgataatcttatatcttcagcatcatcatgaatttctaatc--- |
197 |
Q |
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| T |
14664857 |
atgttaaaattaatcatggatcaagaaagtataccttgaaatacgacccaaataactgataatcttatatcttcagcatcatcatgaatttctaatctta |
14664758 |
T |
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| Q |
198 |
ttatatcttcaacacatcatcaagaatttct |
228 |
Q |
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| T |
14664757 |
ttatatcttca--acatcatcaagaatttct |
14664729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 14658419 - 14658228
Alignment:
| Q |
1 |
acaaaattgttatatgttttgcaacaatgataaatttaattactgtggtgcagtatccgtcaagttcaagttgaaggagtaccgggttcaatggtgtttg |
100 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||| |||| || ||||| |
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| T |
14658419 |
acaaaattgttatctgttttccaacaatgataaatttaattactatggtgcagtatctcccaagttcaaattgaaggactaccgacttcagaggcgtttg |
14658320 |
T |
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| Q |
101 |
atgttaaaattaatcatggatcaagaaagtataccttgcaatacgacctaaataactgataatcttatatcttcagcatcatcatgaatttct |
193 |
Q |
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| T |
14658319 |
atgttaaaattaatcatggatcaggaaagtataccttgaaatacaacc-atataacttataatcttataactaaagcaacatcaagaatttct |
14658228 |
T |
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