View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7687_high_30 (Length: 239)

Name: NF7687_high_30
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7687_high_30
NF7687_high_30
[»] chr5 (30 HSPs)
chr5 (8-224)||(25360464-25360681)
chr5 (8-199)||(36311826-36312017)
chr5 (8-197)||(17195240-17195429)
chr5 (11-207)||(18920861-18921056)
chr5 (8-206)||(13130965-13131157)
chr5 (11-164)||(2599425-2599575)
chr5 (125-209)||(15798078-15798162)
chr5 (125-209)||(19748193-19748276)
chr5 (125-206)||(23228668-23228749)
chr5 (11-120)||(12743126-12743235)
chr5 (93-188)||(1400264-1400363)
chr5 (87-188)||(3601487-3601589)
chr5 (11-112)||(10398230-10398330)
chr5 (91-140)||(12742883-12742932)
chr5 (11-120)||(12805944-12806053)
chr5 (93-163)||(1694960-1695034)
chr5 (125-209)||(33370779-33370863)
chr5 (125-188)||(12742818-12742881)
chr5 (22-105)||(18921351-18921434)
chr5 (96-209)||(36350279-36350396)
chr5 (96-188)||(6793351-6793447)
chr5 (91-140)||(12805701-12805750)
chr5 (126-209)||(4724073-4724156)
chr5 (91-124)||(3459330-3459363)
chr5 (138-191)||(16418111-16418164)
chr5 (11-112)||(17366398-17366498)
chr5 (36-120)||(12806305-12806389)
chr5 (93-140)||(17366684-17366732)
chr5 (91-123)||(19400904-19400936)
chr5 (91-123)||(40012157-40012189)
[»] chr4 (38 HSPs)
chr4 (11-209)||(13850875-13851073)
chr4 (11-209)||(13866389-13866587)
chr4 (72-224)||(23124469-23124621)
chr4 (9-206)||(17292091-17292281)
chr4 (11-209)||(31324300-31324497)
chr4 (90-224)||(3393415-3393549)
chr4 (91-209)||(18412721-18412839)
chr4 (90-209)||(49817159-49817278)
chr4 (11-107)||(13854979-13855075)
chr4 (125-209)||(20759132-20759216)
chr4 (125-209)||(20765523-20765607)
chr4 (91-209)||(17211392-17211511)
chr4 (8-98)||(23620428-23620518)
chr4 (11-108)||(13866751-13866848)
chr4 (93-209)||(24606878-24606995)
chr4 (90-174)||(10312433-10312517)
chr4 (11-114)||(18413031-18413134)
chr4 (88-224)||(1226270-1226407)
chr4 (93-163)||(43889460-43889534)
chr4 (87-224)||(14330652-14330790)
chr4 (93-209)||(21169577-21169697)
chr4 (93-209)||(49817605-49817725)
chr4 (93-163)||(957416-957490)
chr4 (87-209)||(242374-242497)
chr4 (87-209)||(27759453-27759576)
chr4 (87-209)||(33163502-33163625)
chr4 (93-209)||(47657316-47657436)
chr4 (89-209)||(1042875-1042996)
chr4 (150-191)||(24075245-24075286)
chr4 (14-107)||(31324663-31324756)
chr4 (126-174)||(4785420-4785468)
chr4 (93-209)||(11288421-11288536)
chr4 (126-209)||(34529794-34529877)
chr4 (54-120)||(17211773-17211839)
chr4 (126-188)||(42886413-42886475)
chr4 (53-114)||(25763082-25763142)
chr4 (91-124)||(46816158-46816191)
chr4 (91-123)||(885348-885380)
[»] chr7 (29 HSPs)
chr7 (37-209)||(150216-150388)
chr7 (10-206)||(3380554-3380750)
chr7 (37-224)||(18149640-18149828)
chr7 (89-209)||(1642546-1642666)
chr7 (8-123)||(5282336-5282451)
chr7 (125-224)||(12083044-12083143)
chr7 (125-224)||(7414196-7414295)
chr7 (126-209)||(28066383-28066466)
chr7 (118-206)||(11824824-11824912)
chr7 (127-224)||(31267190-31267286)
chr7 (87-188)||(18237713-18237815)
chr7 (93-209)||(21614722-21614839)
chr7 (87-209)||(2205993-2206116)
chr7 (87-156)||(2356470-2356540)
chr7 (149-211)||(27317845-27317907)
chr7 (93-209)||(41048911-41049031)
chr7 (93-209)||(48270776-48270896)
chr7 (93-209)||(15337864-15337984)
chr7 (93-188)||(42735411-42735510)
chr7 (8-72)||(11824914-11824978)
chr7 (125-188)||(12309600-12309663)
chr7 (126-224)||(21187295-21187393)
chr7 (11-120)||(1642247-1642356)
chr7 (137-226)||(21650635-21650724)
chr7 (91-123)||(26601410-26601442)
chr7 (91-158)||(30360695-30360763)
chr7 (91-123)||(39476873-39476905)
chr7 (93-154)||(43351059-43351124)
chr7 (91-123)||(48220376-48220408)
[»] chr2 (28 HSPs)
chr2 (10-209)||(27650304-27650503)
chr2 (8-206)||(31991811-31992009)
chr2 (11-207)||(15891525-15891721)
chr2 (87-202)||(18036116-18036231)
chr2 (93-209)||(33404145-33404261)
chr2 (91-188)||(16253606-16253703)
chr2 (125-209)||(18878634-18878718)
chr2 (141-209)||(26617485-26617553)
chr2 (93-188)||(10364594-10364692)
chr2 (11-107)||(15891275-15891371)
chr2 (90-140)||(20148334-20148384)
chr2 (93-209)||(35491765-35491885)
chr2 (97-188)||(43491601-43491696)
chr2 (125-174)||(20148283-20148332)
chr2 (93-163)||(19471590-19471664)
chr2 (87-209)||(42120142-42120265)
chr2 (94-140)||(6902182-6902228)
chr2 (93-209)||(6976966-6977086)
chr2 (129-209)||(11679084-11679164)
chr2 (149-209)||(11718885-11718945)
chr2 (93-158)||(2919321-2919390)
chr2 (141-188)||(28746972-28747019)
chr2 (126-209)||(41499087-41499170)
chr2 (57-123)||(33404502-33404567)
chr2 (125-174)||(6902131-6902180)
chr2 (54-114)||(18393838-18393897)
chr2 (91-123)||(22493817-22493849)
chr2 (91-123)||(42120558-42120590)
[»] chr6 (23 HSPs)
chr6 (37-209)||(17465243-17465414)
chr6 (11-207)||(20192450-20192646)
chr6 (11-207)||(20242008-20242204)
chr6 (11-207)||(22135992-22136188)
chr6 (11-207)||(22143345-22143541)
chr6 (8-207)||(28051499-28051693)
chr6 (14-166)||(34134824-34134975)
chr6 (14-163)||(14482707-14482855)
chr6 (93-163)||(14115213-14115283)
chr6 (138-224)||(18743985-18744071)
chr6 (11-107)||(20241749-20241845)
chr6 (11-107)||(22135733-22135829)
chr6 (11-107)||(22143086-22143182)
chr6 (93-209)||(30257538-30257658)
chr6 (155-209)||(2402330-2402384)
chr6 (93-188)||(32027587-32027686)
chr6 (93-209)||(13402663-13402783)
chr6 (93-209)||(801295-801412)
chr6 (11-72)||(14482479-14482540)
chr6 (149-188)||(3097533-3097572)
chr6 (149-191)||(5973050-5973092)
chr6 (126-188)||(32037683-32037745)
chr6 (87-123)||(14123443-14123479)
[»] chr8 (11 HSPs)
chr8 (11-209)||(31171697-31171894)
chr8 (11-209)||(3589145-3589344)
chr8 (93-158)||(16575867-16575933)
chr8 (149-224)||(26140265-26140340)
chr8 (58-224)||(38033852-38034018)
chr8 (125-188)||(24629922-24629985)
chr8 (126-209)||(41856969-41857052)
chr8 (93-209)||(44943039-44943159)
chr8 (8-114)||(3009522-3009628)
chr8 (57-110)||(2923829-2923882)
chr8 (91-123)||(38033556-38033588)
[»] chr1 (40 HSPs)
chr1 (11-202)||(14772416-14772605)
chr1 (93-209)||(13283831-13283947)
chr1 (92-209)||(5765332-5765449)
chr1 (10-158)||(16081462-16081609)
chr1 (93-174)||(24363764-24363845)
chr1 (93-209)||(17697172-17697288)
chr1 (90-210)||(16532051-16532171)
chr1 (125-208)||(19262409-19262492)
chr1 (11-114)||(16081724-16081827)
chr1 (87-224)||(3658584-3658722)
chr1 (93-191)||(13973068-13973170)
chr1 (11-107)||(31451764-31451860)
chr1 (141-224)||(15471638-15471721)
chr1 (87-209)||(35576465-35576588)
chr1 (87-209)||(46180237-46180360)
chr1 (87-209)||(50068216-50068339)
chr1 (93-209)||(6435898-6436018)
chr1 (75-188)||(45689266-45689380)
chr1 (11-72)||(14772291-14772352)
chr1 (11-112)||(18842894-18842994)
chr1 (93-209)||(14173718-14173838)
chr1 (93-209)||(35185097-35185217)
chr1 (93-209)||(36909687-36909807)
chr1 (149-216)||(48706929-48706996)
chr1 (93-158)||(49396881-49396950)
chr1 (93-158)||(17372904-17372970)
chr1 (96-163)||(17686324-17686395)
chr1 (93-163)||(23342813-23342887)
chr1 (129-209)||(35586929-35587009)
chr1 (126-209)||(49926377-49926460)
chr1 (57-123)||(17685770-17685835)
chr1 (126-188)||(37778226-37778288)
chr1 (11-72)||(16097795-16097856)
chr1 (117-157)||(18170203-18170243)
chr1 (125-209)||(18842565-18842649)
chr1 (93-140)||(18842651-18842699)
chr1 (91-123)||(27034950-27034982)
chr1 (91-123)||(45689661-45689693)
chr1 (91-123)||(49598520-49598552)
chr1 (91-123)||(50067891-50067923)
[»] chr3 (39 HSPs)
chr3 (91-209)||(18440885-18441003)
chr3 (91-209)||(19485959-19486077)
chr3 (88-172)||(14265582-14265666)
chr3 (87-209)||(774295-774417)
chr3 (11-224)||(25887491-25887704)
chr3 (96-158)||(33449117-33449179)
chr3 (91-207)||(20375843-20375959)
chr3 (91-188)||(6754365-6754463)
chr3 (93-174)||(8633324-8633403)
chr3 (87-224)||(53826652-53826790)
chr3 (91-209)||(6464305-6464424)
chr3 (11-114)||(25887273-25887376)
chr3 (93-209)||(30192678-30192798)
chr3 (96-224)||(36721351-36721483)
chr3 (93-188)||(51015438-51015537)
chr3 (93-163)||(51013237-51013311)
chr3 (89-140)||(7954865-7954916)
chr3 (75-209)||(39416892-39417027)
chr3 (95-163)||(10053236-10053308)
chr3 (11-120)||(18441197-18441305)
chr3 (11-120)||(19486271-19486379)
chr3 (93-224)||(46414293-46414428)
chr3 (89-209)||(49218694-49218815)
chr3 (91-143)||(15637197-15637249)
chr3 (93-163)||(41804088-41804162)
chr3 (86-209)||(42383191-42383315)
chr3 (86-209)||(48087507-48087631)
chr3 (127-191)||(52569406-52569470)
chr3 (93-163)||(4004049-4004120)
chr3 (126-209)||(55206880-55206963)
chr3 (126-163)||(7246280-7246317)
chr3 (126-163)||(47759887-47759924)
chr3 (96-209)||(2428627-2428744)
chr3 (141-209)||(17267306-17267374)
chr3 (91-123)||(25576223-25576255)
chr3 (87-123)||(27187843-27187879)
chr3 (54-114)||(42383549-42383608)
chr3 (91-123)||(42383606-42383638)
chr3 (91-123)||(44835119-44835151)
[»] scaffold0121 (1 HSPs)
scaffold0121 (125-224)||(5462-5561)
[»] scaffold0027 (1 HSPs)
scaffold0027 (141-209)||(36792-36860)
[»] scaffold0004 (1 HSPs)
scaffold0004 (93-188)||(64098-64194)
[»] scaffold0192 (1 HSPs)
scaffold0192 (87-209)||(17873-17996)
[»] scaffold0589 (1 HSPs)
scaffold0589 (63-114)||(4780-4830)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 25360464 - 25360681
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  25360464 aatttttgaaaggaacaatagaacttctgggtgaatgcatgagagttgttgtttaacaggtttgaccttatccaattccagatgtaagacaattgttgta 25360563  T
Q  108 gttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagc-aatgtgacaaacatatcgat 206  Q
    |||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||    
T  25360564 gttgaaaggtgcattctctacctaatcacgatcttctgacggaatcaaactgttgaaaacatcttcaggcgatctcagcaaacgtgacaaacatatcgat 25360663  T
Q  207 ccatgagaacttgttgtg 224  Q
    ||| |||||| |||||||    
T  25360664 ccacgagaacatgttgtg 25360681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 36311826 - 36312017
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    ||||||||||||||||||||||| ||   | |||| || | | ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  36311826 aatttttgaaaggaacaatagaatttacggatgaaggcttcaaagttgttgtttaacaagtttgaccttatccaatttcagaggtaagacaattgttgta 36311925  T
Q  108 gttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaaca 199  Q
    ||||||| |||||||| ||||||||||||||||||||||| |||| ||||| ||||||| ||||||| ||||||||||||| ||||||||||    
T  36311926 gttggaaggtgcattccctacctaatcacgatcttctggcagaattaaactattgagaagatcttcaggcgatctcagcaacgtgacaaaca 36312017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 17195240 - 17195429
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||  | |||||||||||||||||||    
T  17195240 aatttttgaaaggaacaataaaacttctgggtgaatgcttgagagttgttgtttaataggtttgaccttatccaatttcaaaggtaagacaattgttgta 17195339  T
Q  108 gttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaa 197  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||| |||||| || ||||| |   ||||||||||| ||||||||    
T  17195340 gttggaagatgcattccctacctaatcacgatcttctggcggaatcaaattgttgataatatctttagttgatctcagcaacgtgacaaa 17195429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 18921056 - 18920861
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    |||||||||| |||||| |||||   ||||||||| |||||| |||||||||||| ||| ||||||||||||||  | | ||||||||||||||||||||    
T  18921056 ttttgaaaggcacaataaaactttcgggtgaatgcttgagagctgttgtttaacaggtt-gaccttatccaatttcacaagtaagacaattgttgtagtt 18920958  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatc 207  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||   |||||| |||| ||||||||||||||||||    
T  18920957 ggaaggtgcattccctacctaatcacgatcttctggcggaatcaaactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatc 18920861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 13130965 - 13131157
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||| ||      ||||||||||||||||||||    
T  13130965 aatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagtcgttgtttaacaagtttgaccttattca------gaggtaagacaattgttgta 13131058  T
Q  108 gttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgat 206  Q
    ||||||| |||||||||||| |||||||||||||||| ||  ||||||| ||||||||| |||||||   |||||| |||| |||||||||||||||||    
T  13131059 gttggaaggtgcattctctagctaatcacgatcttctagcaaaatcaaaatgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgat 13131157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 2599575 - 2599425
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||| ||||| | |||||| || |||||| ||||||||| |||||||||  ||||||||||  |||||||||||||||||   ||||    
T  2599575 ttttgaaaggaacaataaaacttttgggtgaacgcttgagagctgttgtttagcaagtttgaatttatccaatttcagaggtaagacaattgt---agtt 2599479  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgag 164  Q
    | || |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2599478 gaaaggtgcattctctacctaatcacgatcttctgacggaatcaaactgttgag 2599425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 15798078 - 15798162
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||||||  ||||| ||||||||||||||||||||||| ||||||| || |||||| ||| |||||||||||||| |||||    
T  15798078 ctacctaatcataatcttttggcggaatcaaactgttgagaatatcttcaggcaatctcatcaacgtgacaaacatatcaatcca 15798162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 19748276 - 19748193
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||||||  ||||| ||||||||||||| ||||||||| ||||||| ||||||||||||| || |||||||||||||||||    
T  19748276 ctacctaatcataatcttatggcggaatcaaattgttgagaatatcttcaggcgatctcagcaacgt-acaaacatatcgatcca 19748193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 23228668 - 23228749
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgat 206  Q
    |||||||||||  || |||| |||||||||||||||| |||| ||||||||| ||||||| ||| |||||||||||||||||    
T  23228668 ctacctaatcataattttctagcggaatcaaactgttcagaatatcttcaagtgatctcaacaacgtgacaaacatatcgat 23228749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 12743126 - 12743235
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| |||| |||| || ||  |||||||||| |||||||||||||||| |||||||||  ||| |  |||  ||||||||||||||||||||||||    
T  12743126 ttttgaatggaataataaaaattaaaggtgaatgcttgagagttgttgtttagcaagtttgaatttaccacatttcagaggtaagacaattgttgtagtt 12743225  T
Q  111 ggaaagtgca 120  Q
     ||| |||||    
T  12743226 tgaaggtgca 12743235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 1400264 - 1400363
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctct----acctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| |||||||| ||    ||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  1400264 aagacaattgttgtagctggaaggtgcattcactccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 1400363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 3601589 - 3601487
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||||||||||||||||||||||||||| |  | || ||||| ||||| ||||||||||| |||||||||||| ||||  | |||||||   ||||||||    
T  3601589 agaggtaagacaattgttgtagttggaatgcaccttactctaactaatgacgatcttctgacggaatcaaacttttgatgatatcttcagttgatctcag 3601490  T
Q  186 caa 188  Q
    |||    
T  3601489 caa 3601487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 10398230 - 10398330
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| |||||||||||| |    ||||||||| |||||| ||||||||| |||||||||  ||| || |||| || |||||||||||||||||||||    
T  10398230 ttttgaatggaacaatagaaatgtcgggtgaatgcttgagagatgttgtttagcaagtttgaatttaccccattc-aggggtaagacaattgttgtagtt 10398328  T
Q  111 gg 112  Q
    ||    
T  10398329 gg 10398330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 12742932 - 12742883
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatc 140  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  12742932 gtaagacaattgttgtagttggaagatgcattccctacctaatcacgatc 12742883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 12805944 - 12806053
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| |||| |||| || ||  |||||||||| |||||| ||||||||| |||||||||  ||| |  |||  ||||||||||||||||||||||||    
T  12805944 ttttgaatggaataataaaaattaaaggtgaatgcttgagagctgttgtttagcaagtttgaatttaccacatttcagaggtaagacaattgttgtagtt 12806043  T
Q  111 ggaaagtgca 120  Q
     ||| |||||    
T  12806044 tgaaggtgca 12806053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 1695034 - 1694960
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||    
T  1695034 aagacaattgttgtagctggaaggtgcattcattcggtacctaatgacgatcttctggcggaatcaaacttttga 1694960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 33370863 - 33370779
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    ||||||||||| |||||||||||||||||| |||||||| || |||||||   ||||||||||| || ||   ||||||||||||    
T  33370863 ctacctaatcatgatcttctggcggaatcagactgttgataatatcttcagttgatctcagcaacgttacccgcatatcgatcca 33370779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 12742881 - 12742818
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||||||||||||||||| ||||||||  | |||||||   |||||||||||    
T  12742881 ctacctaatcacgatcttctggcggaatcagactgttgatgatatcttcagttgatctcagcaa 12742818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 18921351 - 18921434
Alignment:
Q  22 acaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttg 105  Q
    |||||| |||||| |||||||||| |||||| ||||||||| || ||||||  || |||||||  |||||||||||| ||||||    
T  18921351 acaataaaacttccaggtgaatgcttgagagctgttgtttagcaggtttgaatttgtccaatttcagaggtaagacagttgttg 18921434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 36350279 - 36350396
Alignment:
Q  96 acaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    ||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||| ||||||||||| ||||  | |||||||   ||||||||||| ||    
T  36350279 acaattgttgtagctggaaggtgcattcattcggtacctaatgacgatcttctggtggaatcaaacttttgatgatatcttcagttgatctcagcaacgt 36350378  T
Q  192 gacaaacatatcgatcca 209  Q
     ||  |||||||||||||    
T  36350379 cacctacatatcgatcca 36350396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 6793351 - 6793447
Alignment:
Q  96 acaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    ||||||||||||| ||||| ||||||||  ||  |||||||| ||||||||||||| |||||||||| ||||  | ||||||||  |||||||||||    
T  6793351 acaattgttgtagctggaaggtgcattcattcagtacctaatgacgatcttctggctgaatcaaacttttgatgatatcttcaattgatctcagcaa 6793447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 12805750 - 12805701
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatc 140  Q
    ||||||||||||||| ||||||||  ||||||| ||||||||||||||||    
T  12805750 gtaagacaattgttgcagttggaagatgcattccctacctaatcacgatc 12805701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 4724073 - 4724156
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||||| || ||   ||||||||||||    
T  4724073 tacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaacgtcacccgcatatcgatcca 4724156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 3459363 - 3459330
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattct 124  Q
    |||||||||||||||||||||||| |||||||||    
T  3459363 gtaagacaattgttgtagttggaatgtgcattct 3459330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 16418111 - 16418164
Alignment:
Q  138 atcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    |||||||||| || ||||||| ||||||| ||||||| | ||||||||||||||    
T  16418111 atcttctggcagagtcaaactcttgagaatatcttcaggtgatctcagcaatgt 16418164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 17366498 - 17366398
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| |||||||||||| |    ||||||||| |||||| || |||||| |||||||||  ||| |  |||| |||||||||| |||||||||||||    
T  17366498 ttttgaatggaacaatagaaatgtcgggtgaatgcttgagagctgatgtttagcaagtttgaatttacctcattc-agaggtaagataattgttgtagtt 17366400  T
Q  111 gg 112  Q
    ||    
T  17366399 gg 17366398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 12806305 - 12806389
Alignment:
Q  36 aggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaaagtgca 120  Q
    |||||||||| |||||| || | |||| |||||||||  | | || |||  |||||||||||||||||||||||| ||| |||||    
T  12806305 aggtgaatgcttgagagctgctatttagcaagtttgaattcaccccatttcagaggtaagacaattgttgtagtttgaaggtgca 12806389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 17366684 - 17366732
Alignment:
Q  93 aagacaattgttgtagttggaaagtgca-ttctctacctaatcacgatc 140  Q
    |||||||||||| ||||||||| ||||| ||| ||||||||||||||||    
T  17366684 aagacaattgttatagttggaaggtgcatttccctacctaatcacgatc 17366732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 19400936 - 19400904
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  19400936 gtaagacaattgttgtagttggaatgtgcattc 19400904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 40012189 - 40012157
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  40012189 gtaagacaattgttgtagttggaatgtgcattc 40012157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 13851073 - 13850875
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||| ||||||  ||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||    
T  13851073 ttttgaaaggaacaataaaacttccgggtgaatgcttgagagatgttgtttaacaagtttaaccttatccaattttagaggtaagataattgttgtagtt 13850974  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| |   |||||||||||||| ||| |||||||||||||    
T  13850973 ggaaggtgcattccctacctaatcacggtcttctggcggaatcaaactgttgagaatatctttagttgatctcagcaatgttacatacatatcgatcca 13850875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 13866587 - 13866389
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||| ||||||  ||||||||| |||||| |||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  13866587 ttttgaaaggaacaataaaacttccgggtgaatgcttgagagctgttgtttaacaagtttgaccttatccaatttcagaggtatgacaattgttgtagtt 13866488  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    | || |||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||   ||||||||||| || ||| ||||||| |||||    
T  13866487 gaaaggtgcattccctacctaatcacggtcttctggcggaatcaaactgttgagaatatcttcagttgatctcagcaacgttacatacatatcaatcca 13866389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 23124469 - 23124621
Alignment:
Q  72 accttatccaattctagaggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatct 171  Q
    |||||||||||||  ||||||||||||||||||||||||| || |||||||| |||||||||||| ||||||||||| ||||||| ||||||||| ||||    
T  23124469 accttatccaatttaagaggtaagacaattgttgtagttgaaaggtgcattccctacctaatcacaatcttctggcgaaatcaaattgttgagaatatct 23124568  T
Q  172 tcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    | ||||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  23124569 ttaagcgatctcagcaacgtgacaaacatatcgatccacgagaacatgttgtg 23124621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 17292281 - 17292091
Alignment:
Q  9 atttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtag 108  Q
    |||||||||| |||||||||||||||  ||||||||| |||||| |||||||||| | |||||||||| ||       |||||||| |||||||||||||    
T  17292281 atttttgaaaagaacaatagaacttccgggtgaatgcttgagagctgttgtttaataggtttgaccttttc-------agaggtaaaacaattgttgtag 17292189  T
Q  109 ttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgat 206  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||   |||||| |||| |||||||||||||||||    
T  17292188 ttggaaggtgcattccctacataatcacgatcttctggcggaatcaaactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgat 17292091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 31324497 - 31324300
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||||||||||  ||||||||| |||||| ||| ||||| |||||||||  |||||  |||  | ||||||||||||||||||||||    
T  31324497 ttttgaaaggaacaatagaacttccgggtgaatgcttgagagctgtcgtttagcaagtttgaa-ttatctcatttcaaaggtaagacaattgttgtagtt 31324399  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||  ||||||   |||||||||||  | ||| |||||||||||||    
T  31324398 ggaaggtgcattccctacctaatcatgatcttctagcggaatcaaactgttgagaatgtcttcagttgatctcagcaactttacacacatatcgatcca 31324300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 3393549 - 3393415
Alignment:
Q  90 ggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaat 189  Q
    ||||| |||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||| || |||||||   |||||||||||     
T  3393549 ggtaatacaaatgttgtagttggaaggtgcattccctacctaatcatgatcttctggcggaatcagactgttgataatatcttcagttgatctcagcaac 3393450  T
Q  190 gtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    || |||  ||||||||||||  ||||| |||||||    
T  3393449 gttacatgcatatcgatccactagaacatgttgtg 3393415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 18412839 - 18412721
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatg 190  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||| || || ||||   ||||||||||| |    
T  18412839 gtaagacaattgttgtagttggaaggtgcattccctacctaatcacgatcttctggcagaatcaaattgttgataatatattcagttgatctcagcaacg 18412740  T
Q  191 tgacaaacatatcgatcca 209  Q
    | |||  ||||||||||||    
T  18412739 ttacacgcatatcgatcca 18412721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 49817159 - 49817278
Alignment:
Q  90 ggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaat 189  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||| |||||| |||||||| || |||||||   ||||||| |||     
T  49817159 ggtaagacaattattgtagttggaaggtgcattccctacctaatcacgatcttttggcagaatcagactgttgataatatcttcatttgatctcatcaac 49817258  T
Q  190 gtgacaaacatatcgatcca 209  Q
    || |||  ||||||||||||    
T  49817259 gttacacgcatatcgatcca 49817278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 13854979 - 13855075
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    ||||||||||||||||| ||||||  ||||||| | ||| || |||||||||||||||||||  ||||||||||  |||||||||||||||||||||    
T  13854979 ttttgaaaggaacaataaaacttccgggtgaatacttgaaagctgttgtttaacaagtttgaatttatccaatttcagaggtaagacaattgttgta 13855075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 20759132 - 20759216
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||||||  ||||||||| ||||||||| ||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||    
T  20759132 ctacctaatcataatcttctggtggaatcaaattgttgagaatatcttcaggcgatatcagcaacgtgacaaacatatcgatcca 20759216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 20765523 - 20765607
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||||||  ||||||||| ||||||||| ||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||    
T  20765523 ctacctaatcataatcttctggtggaatcaaattgttgagaatatcttcaggcgatatcagcaacgtgacaaacatatcgatcca 20765607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 17211511 - 17211392
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaat 189  Q
    ||||||||||||||||||||||||  |||||| | |||||||||||||||||||||||||||||| |||||||| || ||||| |   |||||||||||     
T  17211511 gtaagacaattgttgtagttggaagatgcatttccctacctaatcacgatcttctggcggaatcagactgttgataatatctttagttgatctcagcaac 17211412  T
Q  190 gtgacaaacatatcgatcca 209  Q
    || ||   ||||||||||||    
T  17211411 gttacccgcatatcgatcca 17211392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 23620518 - 23620428
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagaca 98  Q
    ||||||| |||||| ||||| || |||  ||||||||  ||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  23620518 aatttttaaaaggagcaataaaatttccgggtgaatgtttgagagttgttgtttaacaagtttgaccttatcaaatttcagaggtaagaca 23620428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 13866751 - 13866848
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtag 108  Q
    ||||||||||||||||| ||||||  ||||||| | ||||||  ||||||||||||||||||  |||| |||||  |||||||||| |||||||||||    
T  13866751 ttttgaaaggaacaataaaacttccgggtgaatacttgagagccgttgtttaacaagtttgaatttattcaatttcagaggtaagataattgttgtag 13866848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 24606995 - 24606878
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctc-tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    |||||||||||||||||||||| || ||||  | ||||||||||||||||||||||||||||| ||| |||| || |||||||   ||||||||||| ||    
T  24606995 aagacaattgttgtagttggaatgtacatttacctacctaatcacgatcttctggcggaatcagactcttgataatatcttcagttgatctcagcaacgt 24606896  T
Q  192 gacaaacatatcgatcca 209  Q
     ||  ||||||| |||||    
T  24606895 tacccacatatcaatcca 24606878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 10312517 - 10312433
Alignment:
Q  90 ggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttca 174  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||  ||||||| | | |||||| || |||||||    
T  10312517 ggtaagacaattgttgtagttggaaggtgaattccctacctaatcacgatcttccagcggaattagattgttgataatatcttca 10312433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 18413031 - 18413134
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| ||||||||| ||||||  |||||||   |||||||||||||||| |||||||||  ||| | ||||  |||||||||| |||||||||||||    
T  18413031 ttttgaatggaacaataaaacttccgggtgaatatttgagagttgttgtttagcaagtttgaatttacctaatttcagaggtaagataattgttgtagtt 18413130  T
Q  111 ggaa 114  Q
    ||||    
T  18413131 ggaa 18413134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 1226407 - 1226270
Alignment:
Q  88 gaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagc 186  Q
    ||||||||||||||||||||||||||| |  | || | ||| ||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||    
T  1226407 gaggtaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagc 1226308  T
Q  187 aatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    || || ||   ||||||||||||  ||||| |||||||    
T  1226307 aacgttacccgcatatcgatccactagaacatgttgtg 1226270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 43889460 - 43889534
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||||||||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||    
T  43889460 aagacaattgttgtagttggaaggtgcattcattcggtacctaatgacgatcttctggcggaatcaaacttttga 43889534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 14330652 - 14330790
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcattctct-acctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||||||||||||||||||||||||||| |  | ||  || | ||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||    
T  14330652 agaggtaagacaattgttgtagttggaatgcaccttaccttaactaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcag 14330751  T
Q  186 caatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    ||| || ||   |||||||||||||  |||| |||||||    
T  14330752 caacgttacccgcatatcgatccattggaacatgttgtg 14330790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 21169697 - 21169577
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||||||||| ||||||||  ||  |||||||| |||||||||||||||||||||| | ||||  | |||||||   |||||||||||    
T  21169697 aagacaattgttgtagttggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaatttttgatgatatcttcagttgatctcagcaa 21169598  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  21169597 cgtcacctgcatatcgatcca 21169577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 49817605 - 49817725
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    ||||||||||||||||||| || || |||||  ||  |||||||| |||||||||||||||||||| |||||||| || |||||||   |||||||||||    
T  49817605 aagacaattgttgtagttgaaaggtacattcattccgtacctaatgacgatcttctggcggaatcagactgttgataatatcttcagttgatctcagcaa 49817704  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  49817705 cgttacccgcatatcgatcca 49817725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 957416 - 957490
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||    
T  957416 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttga 957490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 242374 - 242497
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||||||||||||||||| ||||||||| |  | || || || ||||| ||||||||||||||||||||| |||||||  | |||||||   ||||||||    
T  242374 agaggtaagacaattgttatagttggaatgcaccttactttaactaatgacgatcttctggcggaatcaagctgttgatgatatcttcagttgatctcag 242473  T
Q  186 caatgtgacaaacatatcgatcca 209  Q
    ||| || ||   ||||||||||||    
T  242474 caacgttacccgcatatcgatcca 242497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 27759576 - 27759453
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    ||||||||||||||||||||||||| || |  | || | ||| ||||| ||||||||||||||||||||| |||||||  | |||||||   ||||||||    
T  27759576 agaggtaagacaattgttgtagttgaaatgcaccttaccctaactaatgacgatcttctggcggaatcaagctgttgatgatatcttcagttgatctcag 27759477  T
Q  186 caatgtgacaaacatatcgatcca 209  Q
    ||| || ||   ||||||||||||    
T  27759476 caacgttactcgcatatcgatcca 27759453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 33163502 - 33163625
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    ||||| |||||||||||||||||||||| |  | || | ||| ||||| ||||||||||||||||||||| |||||||  | |||||||   |||||||     
T  33163502 agaggcaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttctggcggaatcaagctgttgatgatatcttcagttgatctcaa 33163601  T
Q  186 caatgtgacaaacatatcgatcca 209  Q
    ||| || ||  |||||||||||||    
T  33163602 caacgttacccacatatcgatcca 33163625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 47657316 - 47657436
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||| ||||||||||| ||||  | |||||||   |||||||||||    
T  47657316 aagacaattgttgtagctggaatgtgcattcattcgatacctaatgacgatcttctggtggaatcaaacttttgatgatatcttcagttgatctcagcaa 47657415  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  47657416 cgtcacccgcatatcgatcca 47657436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 1042996 - 1042875
Alignment:
Q  89 aggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagca 187  Q
    ||||||||||||||||| |||||||| || | || | ||| ||||| |||||||||||||||||||||  ||||||  | |||||||   ||||||||||    
T  1042996 aggtaagacaattgttgcagttggaatgtaccttaccctaactaatgacgatcttctggcggaatcaagttgttgattatatcttcagttgatctcagca 1042897  T
Q  188 atgtgacaaacatatcgatcca 209  Q
    | || ||   ||||||||||||    
T  1042896 acgtcacccgcatatcgatcca 1042875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 24075286 - 24075245
Alignment:
Q  150 aatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  24075286 aatcaaaatgttgagaatatcttcaagcgatctcagcaatgt 24075245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 31324663 - 31324756
Alignment:
Q  14 tgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    |||||||||||||  |||||   ||||||||| |||||| |||| |||| |||||||||  |||||| |||  |||||||| ||||||||||||    
T  31324663 tgaaaggaacaattaaactttcgggtgaatgcttgagagctgttatttagcaagtttgaatttatcccatttcagaggtaacacaattgttgta 31324756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 4785420 - 4785468
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttca 174  Q
    |||||||| |||||||| |||||||||||||||||||| || |||||||    
T  4785420 tacctaatgacgatcttgtggcggaatcaaactgttgataatatcttca 4785468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 11288536 - 11288421
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtg 192  Q
    ||||||||| | |||||||||| |||||||| |||| |||||||||||||||  | |||||||| || ||| || |||||||   ||||||||||| ||     
T  11288536 aagacaattatggtagttggaaggtgcattccctacttaatcacgatcttctaacagaatcaaattg-tgataatatcttcagttgatctcagcaacgtt 11288438  T
Q  193 acaaacatatcgatcca 209  Q
    ||   ||||||||||||    
T  11288437 actcgcatatcgatcca 11288421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 34529794 - 34529877
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||||| || ||   ||||||||||||    
T  34529794 tacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaacgtcacctgcatatcgatcca 34529877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 17211773 - 17211839
Alignment:
Q  54 tgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaaagtgca 120  Q
    ||||||||| |||||||||  ||| || |||  |||||||||||||||||||||||| ||| |||||    
T  17211773 tgttgtttagcaagtttgaatttaccccatttcagaggtaagacaattgttgtagtttgaaggtgca 17211839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 42886475 - 42886413
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||| | |||||||||||||||||| |||||||| || |||||||   |||||||||||    
T  42886475 tacctaatgatgatcttctggcggaatcagactgttgataatatcttcagttgatctcagcaa 42886413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 25763082 - 25763142
Alignment:
Q  53 ttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaa 114  Q
    ||||||||| ||||||||||| ||| || |||| | ||||||||||||||||| ||||||||    
T  25763082 ttgttgtttgacaagtttgactttaccccattcga-aggtaagacaattgttggagttggaa 25763142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 46816158 - 46816191
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattct 124  Q
    |||||||||||||||||||||||| |||||||||    
T  46816158 gtaagacaattgttgtagttggaatgtgcattct 46816191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 885380 - 885348
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  885380 gtaagacaattgttgtagttggaatgtgcattc 885348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 150388 - 150216
Alignment:
Q  37 ggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaaagtgcattctctacctaatcac 136  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  150388 ggtgaatgcatgagagttgttgtttaacaggtttgaccttatccaattttagaggtaagccaattgttgtagttggaaggtgcattccctacctaatcac 150289  T
Q  137 gatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||| || |||||||| ||||||||| ||||||| ||||||||| ||| |||||||| |||||||||||    
T  150288 gatcttctagcagaatcaaattgttgagaatatcttcaggcgatctcaacaacgtgacaaatatatcgatcca 150216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 3380554 - 3380750
Alignment:
Q  10 tttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagt 109  Q
    |||||||||||||||||| ||||||  ||| ||||| ||||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||| ||    
T  3380554 tttttgaaaggaacaataaaacttccgggtaaatgcttgagagttgttgtttaataggtttgaccttatccaatttcagaggtaagacaattgttgtcgt 3380653  T
Q  110 tggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgat 206  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||   ||||||  |||||||| ||||||||||||    
T  3380654 tggaaggtgcattccctacctaatcacgatcttctggcagaatcaaattgttgagaatatcttcagttgatctctacaatgtgataaacatatcgat 3380750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 18149828 - 18149640
Alignment:
Q  37 ggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgtt-gtagttggaaagtgcattctctacctaatca 135  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||||||  | |||||||||| || || ||||||| ||||||||||| ||||||||  |    
T  18149828 ggtgaatgcttgagagttgttgtttaacagggttgaccttatccaatttcaaaggtaagacatttttttgtagttgaaaagtgcattccctacctaaata 18149729  T
Q  136 cgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    ||||||||||||| ||||||||||||||||| |||||||   |||||| ||||  ||| ||||| ||||||||| | |||| |||||||    
T  18149728 cgatcttctggcgcaatcaaactgttgagaatatcttcagttgatctctgcaacttgaaaaacaaatcgatccacgggaacatgttgtg 18149640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 1642546 - 1642666
Alignment:
Q  89 aggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||   ||||||| |||    
T  1642546 aggtaagacaattgttgtagttggaaggtgcattccctacctaatcacgatcttctggcggaatcaaactgttgataatatcttcagttgatctcaacaa 1642645  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || |||  ||||||||||||    
T  1642646 cgttacacgcatatcgatcca 1642666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 5282336 - 5282451
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||| |||||||| |||| |||||| | |||||||||||||    
T  5282336 aatttttgaaaggaacaatagaactttcgggtgaatgcatgagagttgttgtttaacaggtttaaccttatcaaattttagagggaggacaattgttgta 5282435  T
Q  108 gttggaaagtgcattc 123  Q
    |||| || ||||||||    
T  5282436 gttgaaaggtgcattc 5282451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 12083143 - 12083044
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    |||||||||||  |||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  12083143 ctacctaatcataatcttcaggcggaaccaaactgttgagaatatcttcaggcgatctcagcaatgtgacaaacatatccatccatgggaacatgttgtg 12083044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 7414196 - 7414295
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    |||||||||||  ||||||||||| ||||||||||||||||| || |||| ||||||||||||| ||||||||||||| |||||| |||||| |||||||    
T  7414196 ctacctaatcataatcttctggcgaaatcaaactgttgagaatattttcaggcgatctcagcaacgtgacaaacatatagatccacgagaacatgttgtg 7414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 28066466 - 28066383
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||  |||||||||||| ||||||||||||||||||||    
T  28066466 tacctaatcacgatgttctggcggaatcaaacttttgagaatatcttcagacgatctcagcaacgtgacaaacatatcgatcca 28066383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 11824912 - 11824824
Alignment:
Q  118 gcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgat 206  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| || |||||||   |||||| |||| |||||| ||||||||||    
T  11824912 gcattccctacctaatcacgatcttctagcggaatcaaactgttgaaaatatcttcagttgatctctgcaacgtgacatacatatcgat 11824824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 31267286 - 31267190
Alignment:
Q  127 acctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    |||||||||  ||||||| || ||||||||||||| |||| ||||||| ||||||| ||||| |||||||||||||||||||| | |||| |||||||    
T  31267286 acctaatcataatcttctagctgaatcaaactgtt-agaatatcttcaggcgatcttagcaacgtgacaaacatatcgatccacgggaacatgttgtg 31267190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 18237815 - 18237713
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||||||||||||||||||||||||||| |  | || | ||| ||||| |||||||||||||||||||||||||||||  | |||||||   ||||||||    
T  18237815 agaggtaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttctggcggaatcaaactgttgatgatatcttcagttgatctcag 18237716  T
Q  186 caa 188  Q
    |||    
T  18237715 caa 18237713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 21614722 - 21614839
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    ||||||||||||||||||| || ||||||| | |||||||||||||| ||||||||||||||||| | ||||  | |||||||   ||||||||||| ||    
T  21614722 aagacaattgttgtagttgaaaggtgcatttccctacctaatcacgaacttctggcggaatcaaaattttgatgatatcttcagttgatctcagcaacgt 21614821  T
Q  192 gacaaacatatcgatcca 209  Q
     ||   ||||||||||||    
T  21614822 tacccgcatatcgatcca 21614839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 2205993 - 2206116
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcattctc-tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||||||||||||||||||||||||||| |  | || || || ||||| ||||||||||||||||||||| |||||||  | |||||||   ||||||||    
T  2205993 agaggtaagacaattgttgtagttggaatgcaccttatcctaactaatgacgatcttctggcggaatcaagctgttgatgatatcttcagttgatctcag 2206092  T
Q  186 caatgtgacaaacatatcgatcca 209  Q
    ||| || ||   ||||||||||||    
T  2206093 caacgttacccgcatatcgatcca 2206116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 2356540 - 2356470
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgca-ttctctacctaatcacgatcttctggcggaatcaaa 156  Q
    ||||||||||||||||||||||||||||  |||| ||| ||||||||||||| |||| | |||||||||||    
T  2356540 agaggtaagacaattgttgtagttggaagatgcatttccctacctaatcacggtcttatagcggaatcaaa 2356470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 27317845 - 27317907
Alignment:
Q  149 gaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatg 211  Q
    |||||||||| ||||||| ||||||  ||||||||||||| |||||||||||||| |||||||    
T  27317845 gaatcaaactattgagaagatcttccggcgatctcagcaacgtgacaaacatatcaatccatg 27317907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 41049031 - 41048911
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc---tc-tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||   || |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  41049031 aagacaattgttgtagctggaaggtgcattcatttcgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 41048932  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  41048931 cgtcacccgcatatcgatcca 41048911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 48270896 - 48270776
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||||||||| ||||||||  ||  |||||||  |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  48270896 aagacaattgttgtagttggaatgtgcattcattccgtacctaacgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 48270797  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  48270796 cgtcacccgcatatcgatcca 48270776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 15337864 - 15337984
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||| ||||| ||| ||||||||  ||  |||||||| |||||||||||||||||||| |||||| | || |||||||   |||||||||||    
T  15337864 aagacaattgttttagttagaaggtgcattcattccatacctaatgacgatcttctggcggaatcagactgtttataatatcttcagttgatctcagcaa 15337963  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  15337964 cgttacccgcatatcgatcca 15337984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 42735510 - 42735411
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||| ||||||||||||| ||||  | |||||||   |||||||||||    
T  42735510 aagacaattgttgtagctggaaggtgcattcattcggtacctaatgacgatcttcttgcggaatcaaacttttgatgatatcttcagttgatctcagcaa 42735411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 11824978 - 11824914
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttga 72  Q
    ||||||| |||||||||||| |||||   ||||||||| |||||| |||||||||||| ||||||    
T  11824978 aatttttaaaaggaacaataaaactttcgggtgaatgcttgagagctgttgtttaacaggtttga 11824914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 12309600 - 12309663
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||| ||  ||||| |||| |||||||||| ||||||| ||||||| |||||||||||||    
T  12309600 ctacctaaacataatcttgtggcagaatcaaactcttgagaatatcttcatgcgatctcagcaa 12309663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 21187295 - 21187393
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    |||||||| ||||||||||| |||||||||||| ||||  | |||||||   ||||||||||| || ||   ||||||||||||  ||||| |||||||    
T  21187295 tacctaatgacgatcttctgacggaatcaaacttttgatgatatcttcagttgatctcagcaacgtcacccgcatatcgatccactagaacatgttgtg 21187393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 1642356 - 1642247
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| | || |||| ||||||  ||||||||| |||||| || |||||| | |||||||  ||| || |||  | ||||||||||||||||||||||    
T  1642356 ttttgaatgaaataataaaacttccgggtgaatgcttgagagctgctgtttagccagtttgaatttaccccatttcataggtaagacaattgttgtagtt 1642257  T
Q  111 ggaaagtgca 120  Q
     ||| |||||    
T  1642256 tgaaggtgca 1642247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 21650724 - 21650635
Alignment:
Q  137 gatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtgat 226  Q
    |||||| ||||||||||| |||||||| || |||||||   ||||||||||| || ||  |||||||||||||   |||| |||||||||    
T  21650724 gatcttatggcggaatcagactgttgataatatcttcagttgatctcagcaacgttacccacatatcgatccactggaacatgttgtgat 21650635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 26601410 - 26601442
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  26601410 gtaagacaattgttgtagttggaatgtgcattc 26601442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 30360763 - 30360695
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaact 158  Q
    |||||||||| ||| ||||||||| |  |||| | ||| ||||| ||||||||||||||||||||||||    
T  30360763 gtaagacaatagttatagttggaatgcacattaccctaactaatgacgatcttctggcggaatcaaact 30360695  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 39476873 - 39476905
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  39476873 gtaagacaattgttgtagttggaatgtgcattc 39476905  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 43351059 - 43351124
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc----tctacctaatcacgatcttctggcggaatca 154  Q
    |||||||||||||||| ||||| ||||||||    | |||||||| |||||||||||| |||||||    
T  43351059 aagacaattgttgtagctggaaggtgcattcattctgtacctaatgacgatcttctggtggaatca 43351124  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 48220376 - 48220408
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  48220376 gtaagacaattgttgtagttggaatgtgcattc 48220408  T

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Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 27650304 - 27650503
Alignment:
Q  10 tttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagt 109  Q
    ||||| |||||||||||| |||||   ||||||||| ||||| |||||||| |||| |||||||||||||||| |  ||||||||| |||||||||||||    
T  27650304 tttttaaaaggaacaatataactttcgggtgaatgcttgagatttgttgttcaacaggtttgaccttatccaacttcagaggtaagtcaattgttgtagt 27650403  T
Q  110 tggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||| ||||||||||||||||||||    
T  27650404 tggaaggtgcattccctacctaatcacgatcttctggcggaatcaaactgttgagaatatcttcagttgatctcagcaacgtgacaaacatatcgatcca 27650503  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 31991811 - 31992009
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    |||||||||||||||||||| |||||   ||||||||| |||||| ||||||| || | ||||||||||||||||||  |||||||||||||||||||||    
T  31991811 aatttttgaaaggaacaataaaactttcgggtgaatgcttgagagctgttgttcaataggtttgaccttatccaatttcagaggtaagacaattgttgta 31991910  T
Q  108 gttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgat 206  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||   |||||| |||| |||||||||||||||||    
T  31991911 gttggaaggtgcattccctacctaatcacgatcttctggcggaatcaaattgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgat 31992009  T

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Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 15891525 - 15891721
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||| |||||| |||||||||| |||||  |||| |||| |||||||||  ||||||||||  ||| ||| ||||||||||||||||    
T  15891525 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaactgttatttagcaagtttgaatttatccaatttaagaagtatgacaattgttgtagtt 15891624  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatc 207  Q
    |||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||   |||||| |||| ||||||||||||||||||    
T  15891625 ggaaggtgcattccctacctaatcacgatattctagcggaatcaaactgttgagaatatcttcagttgatctccgcaacgtgacaaacatatcgatc 15891721  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 18036116 - 18036231
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagc 186  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||| ||||||||| || || |   |||||| ||    
T  18036116 agaggtaagacaattgttgtagttggaaggtgcatttcctacctaatcacgatcttctggcggaatcaaattgttgagaatatttttagttgatctctgc 18036215  T
Q  187 aatgtgacaaacatat 202  Q
    || |||||||||||||    
T  18036216 aacgtgacaaacatat 18036231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 33404261 - 33404145
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtg 192  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||  |||| |||||||| || |||||||   ||||||||||| ||     
T  33404261 aagacaattgttgtagttggaaggtgcattccctacctaatcacgatcttctggcgacatcagactgttgataatatcttcagttgatctcagcaacgtt 33404162  T
Q  193 acaaacatatcgatcca 209  Q
    ||   ||||||||||||    
T  33404161 acccgcatatcgatcca 33404145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 16253703 - 16253606
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||| || || ||||| |   |||||||||||    
T  16253703 gtaagacaattgttgtagttggaaggtgtattccctacctaatcacgatcttctggtggaatcaaactgtcgataatatctttagttgatctcagcaa 16253606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 18878718 - 18878634
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    ||||||||| |  |||||||| |||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||    
T  18878718 ctacctaatgataatcttctgtcggaatcaaattgttgagaatatcttcaggcgatctcagcaacgtgacaaacatattgatcca 18878634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 26617485 - 26617553
Alignment:
Q  141 ttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||| ||||||||||||| || |||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  26617485 ttctagcggaatcaaactcttaagaatatcttcaggcgatctcagcaacgtgacaaacatatcgatcca 26617553  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 10364594 - 10364692
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattct---ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||    |||| |||| |||||||||||||||||||||||| ||||  | ||||||||  |||||||||||    
T  10364594 aagacaattgttgtagctggaaggtgcattcattcctacgtaatgacgatcttctggcggaatcaaacttttgatgatatcttcaattgatctcagcaa 10364692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 15891371 - 15891275
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    |||||| |||||||||| ||||||  ||||||||| |||||| ||||||||| || |||| |  |||| |||||  |||||||||||||||||||||    
T  15891371 ttttgataggaacaataaaacttccgggtgaatgcttgagagctgttgtttagcaggtttaaatttattcaatttcagaggtaagacaattgttgta 15891275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 20148384 - 20148334
Alignment:
Q  90 ggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatc 140  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||||||    
T  20148384 ggtaagacaattgttgtagttggaaggagcattccctacctaatcacgatc 20148334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 35491885 - 35491765
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  35491885 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 35491786  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  35491785 cgtcacccgcatatcgatcca 35491765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 43491696 - 43491601
Alignment:
Q  97 caattgttgtagttggaaagtgcattct----ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||||| |||||||||     |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  43491696 caattgttgtagttggaaggtgcattctttccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 43491601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 20148332 - 20148283
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttca 174  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||    
T  20148332 ctacctaatcacgatcttctggcggaatcagactgttgaaaatatcttca 20148283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 19471590 - 19471664
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||    
T  19471590 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttga 19471664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 42120265 - 42120142
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||||||||||||| ||||||||||||| |  | || | ||| ||||| ||||||||||||||||||||| |||||||  | |||||||   ||||||||    
T  42120265 agaggtaagacaatcgttgtagttggaatgcaccttaccctaactaatgacgatcttctggcggaatcaagctgttgatgatatcttcagttgatctcag 42120166  T
Q  186 caatgtgacaaacatatcgatcca 209  Q
    ||| || ||  ||||||| |||||    
T  42120165 caacgttacccacatatcaatcca 42120142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 6902228 - 6902182
Alignment:
Q  94 agacaattgttgtagttggaaagtgcattctctacctaatcacgatc 140  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  6902228 agacaattgttgtagttggaaggtgcattccctacctaatcatgatc 6902182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 6977086 - 6976966
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||| ||||||||||||| ||||  | |||||||   |||||||||||    
T  6977086 aagacaattgttgtagctggaaggtgcattcattcggtacctaatgacgatcttctcgcggaatcaaacttttgatgatatcttcagttgatctcagcaa 6976987  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  6976986 cgtcacccgcatatcgatcca 6976966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 11679084 - 11679164
Alignment:
Q  129 ctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||  ||||| |||| |||||||||||||||||| |||||||   ||||| || || |||| |||||||||||||||    
T  11679084 ctaatcataatcttatggcagaatcaaactgttgagaatatcttcagttgatctaagtaacgtgagaaacatatcgatcca 11679164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 11718945 - 11718885
Alignment:
Q  149 gaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||||||||||||| |||||||   |||||||| || |||| |||||||||||||||    
T  11718945 gaatcaaactgttgagaatatcttcagttgatctcagtaacgtgagaaacatatcgatcca 11718885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 2919321 - 2919390
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaact 158  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||| |||||||||||||||    
T  2919321 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttttggcggaatcaaact 2919390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 28746972 - 28747019
Alignment:
Q  141 ttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    ||||||| |||||||||||||||||| || |||| |||||||||||||    
T  28746972 ttctggcagaatcaaactgttgagaatattttcaggcgatctcagcaa 28747019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 41499087 - 41499170
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||||| || ||   ||||||||||||    
T  41499087 tacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaacgtcaccctcatatcgatcca 41499170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 33404502 - 33404567
Alignment:
Q  57 tgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||| |||||||||  ||| ||||||| ||||||||||||||||||||| |||||| || |||||    
T  33404502 tgtttagcaagtttgaatttacccaattc-agaggtaagacaattgttgtatttggaaggtacattc 33404567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 6902180 - 6902131
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttca 174  Q
    ||||||||||| |||||||| ||||||||| |||||||| || |||||||    
T  6902180 ctacctaatcatgatcttctcgcggaatcagactgttgataatatcttca 6902131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 18393838 - 18393897
Alignment:
Q  54 tgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaa 114  Q
    |||||||| ||||||||||  ||| || |||| | ||||||||||||||||||||||||||    
T  18393838 tgttgtttgacaagtttgaatttaccccattcaa-aggtaagacaattgttgtagttggaa 18393897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 22493849 - 22493817
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  22493849 gtaagacaattgttgtagttggaatgtgcattc 22493817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 42120590 - 42120558
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  42120590 gtaagacaattgttgtagttggaatgtgcattc 42120558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 17465243 - 17465414
Alignment:
Q  37 ggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaaagtgcattctctacctaatcac 136  Q
    ||||||||| ||||| ||| | ||||||| |||||| |||||||||||  |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  17465243 ggtgaatgcttgagacttggt-tttaacaggtttgatcttatccaatttcagaggtaagacaattgttgtagttggaaggtgtattctctacctaatcac 17465341  T
Q  137 gatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||| ||||||||||||||||||||||| |||||||   |||||| |||| ||||||||||||||||||||    
T  17465342 gatcttttggcggaatcaaactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatcca 17465414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 20192646 - 20192450
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||| |||||| |||||||||| ||||| |||||||||| |||||||||  ||||||||||  ||||||| ||||||||||||||||    
T  20192646 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaattgttgtttagcaagtttgaatttatccaatttaagaggtaggacaattgttgtagtt 20192547  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatc 207  Q
    |||| |||||||| || |||||||||  ||||||| | ||| || ||||||||||| |||||||   |||||| |||| ||||||||||||||||||    
T  20192546 ggaaggtgcattcccttcctaatcacattcttctgccagaaccacactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatc 20192450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 20242008 - 20242204
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||| |||||| |||||||||| ||||| |||||||||| |||||||||  ||||||||||  ||||||| ||||||||||||||||    
T  20242008 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaattgttgtttagcaagtttgaatttatccaatttaagaggtaggacaattgttgtagtt 20242107  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatc 207  Q
    |||| |||||||| || |||||||||  ||||||| | ||| || ||||||||||| |||||||   |||||| |||| ||||||||||||||||||    
T  20242108 ggaaggtgcattcccttcctaatcacattcttctgccagaaccacactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatc 20242204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 22135992 - 22136188
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||| |||||| |||||||||| ||||| |||||||||| |||||||||  ||||||||||  ||||||| ||||||||||||||||    
T  22135992 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaattgttgtttagcaagtttgaatttatccaatttaagaggtaggacaattgttgtagtt 22136091  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatc 207  Q
    |||| |||||||| || |||||||||  ||||||| | ||| || ||||||||||| |||||||   |||||| |||| ||||||||||||||||||    
T  22136092 ggaaggtgcattcccttcctaatcacattcttctgccagaaccacactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatc 22136188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 22143345 - 22143541
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||| |||||| |||||||||| ||||| |||||||||| |||||||||  ||||||||||  ||||||| ||||||||||||||||    
T  22143345 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaattgttgtttagcaagtttgaatttatccaatttaagaggtaggacaattgttgtagtt 22143444  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatc 207  Q
    |||| |||||||| || |||||||||  ||||||| | ||| || ||||||||||| |||||||   |||||| |||| ||||||||||||||||||    
T  22143445 ggaaggtgcattcccttcctaatcacattcttctgccagaaccacactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatc 22143541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 28051693 - 28051499
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    |||||||||||||||||||| ||||| | ||||||||  |||||| |||||||||||| |||||||||||| ||      ||||||||| ||| ||||||    
T  28051693 aatttttgaaaggaacaataaaacttttgggtgaatgtttgagagctgttgtttaacaggtttgaccttattca------gaggtaagaaaatggttgta 28051600  T
Q  108 gttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaac-atcttcaagcgatctcagcaatgtgacaaacatatcgat 206  Q
    |||| || ||||||||||||| ||||||||||||||| ||||||||||||| |||||||  |||| ||   |||||| |||| |||||||||||||||||    
T  28051599 gttgaaaggtgcattctctacgtaatcacgatcttctagcggaatcaaactattgagaaatatctccagttgatctctgcaacgtgacaaacatatcgat 28051500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 34134975 - 34134824
Alignment:
Q  14 tgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttgga 113  Q
    |||||||||||||| |||||   ||||||||| || ||  ||||||||| |||||||||  |  |||| ||| ||||||||||||||||||||||||| |    
T  34134975 tgaaaggaacaataaaactttcgggtgaatgcttgggaactgttgtttagcaagtttgaattattccatttc-agaggtaagacaattgttgtagttgaa 34134877  T
Q  114 aagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaa 166  Q
    | |||||||| |||||||||||||||||| | |||||||||||||||||||||    
T  34134876 aggtgcattccctacctaatcacgatcttttagcggaatcaaactgttgagaa 34134824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 14482707 - 14482855
Alignment:
Q  14 tgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttgga 113  Q
    |||||||||||||| ||||||  ||||||||  || |||| |||||||| |||||||||  ||| |||| |  ||||| ||||||||||||||||| |||    
T  14482707 tgaaaggaacaataaaacttccgggtgaatgtttgggagt-gttgtttagcaagtttgaaattacccaaattcagaggcaagacaattgttgtagtggga 14482805  T
Q  114 aagtgcattctctacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    | |||||||| |||||||||||  ||||||| ||||||||||||||||||    
T  14482806 aggtgcattccctacctaatcattatcttctagcggaatcaaactgttga 14482855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 14115283 - 14115213
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |||||| ||| ||||    
T  14115283 aagacaattgttgtagttggaaggtgcattccctacctaatcactatcttctggcagaatcagactcttga 14115213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 18743985 - 18744071
Alignment:
Q  138 atcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    ||||| ||| ||||||||||||| ||||| |||||||  ||||||||||||  ||||||||||||||||||| |||||| |||||||    
T  18743985 atcttatggaggaatcaaactgtcgagaatatcttcagacgatctcagcaacatgacaaacatatcgatccacgagaacatgttgtg 18744071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 20241845 - 20241749
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||  ||||||||  || |||||  ||||||||||  |||||||||| ||||||||||    
T  20241845 ttttgaaaggaacaataaaacttctgggtgaatgcttgagagcagttgtttagaaaatttgaatttatccaatttcagaggtaagataattgttgta 20241749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 22135829 - 22135733
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||  ||||||||  || |||||  ||||||||||  |||||||||| ||||||||||    
T  22135829 ttttgaaaggaacaataaaacttctgggtgaatgcttgagagcagttgtttagaaaatttgaatttatccaatttcagaggtaagataattgttgta 22135733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 22143182 - 22143086
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||  ||||||||  || |||||  ||||||||||  |||||||||| ||||||||||    
T  22143182 ttttgaaaggaacaataaaacttctgggtgaatgcttgagagcagttgtttagaaaatttgaatttatccaatttcagaggtaagataattgttgta 22143086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 30257538 - 30257658
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||| ||||||||||||| ||||  | ||||||||  |||||||||||    
T  30257538 aagacaattgttgtagctggaaggtgcattcattcggtacctaatgacgatcttctagcggaatcaaacttttgatgatatcttcaattgatctcagcaa 30257637  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||  |||||||||||||    
T  30257638 cgtcacccacatatcgatcca 30257658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 2402384 - 2402330
Alignment:
Q  155 aactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||||||  ||||||| ||||||||||||| ||||||||||||||||||||    
T  2402384 aactgttgagattatcttcaggcgatctcagcaacgtgacaaacatatcgatcca 2402330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 32027587 - 32027686
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  32027587 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 32027686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 13402783 - 13402663
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||| | ||||  | |||||||   |||||||||||    
T  13402783 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaatttttgatgatatcttcagttgatctcagcaa 13402684  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  13402683 cgtcacccgcatatcgatcca 13402663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 801412 - 801295
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    |||||||||||||||||||||| |  | || | ||| ||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||||| ||    
T  801412 aagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaacgt 801313  T
Q  192 gacaaacatatcgatcca 209  Q
     ||   ||||||||||||    
T  801312 cacccgcatatcgatcca 801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 14482540 - 14482479
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttga 72  Q
    ||||||| ||||||||| |||||   ||||||||| |||||||||||||||| |||||||||    
T  14482540 ttttgaatggaacaataaaactttcgggtgaatgcttgagagttgttgtttagcaagtttga 14482479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 3097533 - 3097572
Alignment:
Q  149 gaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  3097533 gaatcaaactgttgagaatatcttcaggcgatctcagcaa 3097572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 5973050 - 5973092
Alignment:
Q  149 gaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||    
T  5973050 gaatcaaactcttgagaatatcttcaggcgatctcagcaatgt 5973092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 32037683 - 32037745
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  32037683 tacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 32037745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 14123443 - 14123479
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcattc 123  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  14123443 agaggcaagacaattgttgtagttggaaggtgcattc 14123479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 31171697 - 31171894
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||||||||||  ||||||||| |||||  |||||||||||||||||||  |||||  |||  ||||||||||||||||||||||||    
T  31171697 ttttgaaaggaacaatagaacttccgggtgaatgcttgagaactgttgtttaacaagtttgaa-ttatctcatttcagaggtaagacaattgttgtagtt 31171795  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||||||||| || || ||||   ||||||||||| || ||  |||||||||||||    
T  31171796 ggaaggtgcattccatacctaatcacgatcttctggcggaatcaaactgttgataatattttcagttgatctcagcaacgtcacccacatatcgatcca 31171894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 3589145 - 3589344
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatc-caattct-agaggtaagacaattgttgtag 108  Q
    ||||||||||||||| |||| |||  ||||||||| |||||  ||||||||| |||||||||  ||||| || |||  ||||||||||||||||||||||    
T  3589145 ttttgaaaggaacaacagaatttccgggtgaatgcttgagaactgttgtttagcaagtttgaa-ttatctcatttcagagaggtaagacaattgttgtag 3589243  T
Q  109 ttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcc 208  Q
    || ||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||  ||||||   ||||||| |||||| |||  |||||||||||    
T  3589244 tttgaaggtgcattccctacctaatcacgatcttctggcggaatcaaactgttgataatgtcttcagttgatctcaacaatgttacacgcatatcgatcc 3589343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 16575933 - 16575867
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaact 158  Q
    |||||||||||||||||||||| ||||||| | || ||||||||||| |||||||||||||||||||    
T  16575933 aagacaattgttgtagttggaaggtgcatttccctgcctaatcacgaacttctggcggaatcaaact 16575867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 26140340 - 26140265
Alignment:
Q  149 gaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    |||||||||| || |||| ||||||| ||||||||| ||| || ||| ||||||||||||||| |||| |||||||    
T  26140340 gaatcaaactcttaagaatatcttcaggcgatctcaacaacgtaacatacatatcgatccatgggaacatgttgtg 26140265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 38033852 - 38034018
Alignment:
Q  58 gtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaa 156  Q
    ||||| |||||||||  ||| ||||||  |||||||||||||||||||||||||||| |  | || | ||| ||||| ||||||||| |||||||||||     
T  38033852 gtttatcaagtttgaa-ttacccaatttcagaggtaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttccggcggaatcaag 38033950  T
Q  157 ctgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    || ||||  | |||||||   ||||||||||| || ||   ||||||||||||  ||||| |||||||    
T  38033951 ctattgatgatatcttcagttgatctcagcaacgttacccgcatatcgatccactagaacatgttgtg 38034018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 24629922 - 24629985
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||| ||  ||||| |||| |||||||||| ||||||| ||||||| |||||||||||||    
T  24629922 ctacctaaacataatcttgtggcagaatcaaactcttgagaatatcttcaggcgatctcagcaa 24629985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 41856969 - 41857052
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||||| || ||   ||||||||||||    
T  41856969 tacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaacgtcacccgcatatcgatcca 41857052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 44943039 - 44943159
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcat----tctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||    ||  |||||||| || ||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  44943039 aagacaattgttgtagctggaaggtgcatacattccgtacctaatgacaatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 44943138  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  44943139 cgtcacccgcatatcgatcca 44943159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3009628 - 3009522
Alignment:
Q  8 aatttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    |||||| ||||| ||||| ||||||||  ||||||| |  || ||||||||||||||| |||||||||| ||  |||  | ||| || ||||| ||||||    
T  3009628 aattttcgaaagaaacaacagaacttccgggtgaatactagatagttgttgtttaacaggtttgaccttgtctgatttcaaaggcaacacaatcgttgta 3009529  T
Q  108 gttggaa 114  Q
    |||||||    
T  3009528 gttggaa 3009522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 2923829 - 2923882
Alignment:
Q  57 tgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||| ||| |||||||||| | |  ||||||||||||||||||||||||    
T  2923829 tgtttaacaggttcgaccttatccgacttcagaggtaagacaattgttgtagtt 2923882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 38033556 - 38033588
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  38033556 gtaagacaattgttgtagttggaatgtgcattc 38033588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 14772416 - 14772605
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    |||||||||||| |||||||||| | ||||||||  || ||  ||| ||||| |||||||||  |||||  ||| ||||||||| |||||| ||||||||    
T  14772416 ttttgaaaggaagaatagaactttt-ggtgaatgtttgggaactgtcgtttagcaagtttgaa-ttatctcattttagaggtaacacaattcttgtagtt 14772513  T
Q  111 ggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatat 202  Q
    |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||||  ||||||||||||    
T  14772514 ggaaggtgcattccctacctaatcacgatcttctggcagaatcaaactgttgagaacatcttcaattgatctctgcaacatgacaaacatat 14772605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 13283947 - 13283831
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtg 192  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||   ||||||||||| ||     
T  13283947 aagacaattgttgtagttggaaggtgcattctctacctaatcacgatcttctggcggaatcagactgttgataatatattcagttgatctcagcaacgtt 13283848  T
Q  193 acaaacatatcgatcca 209  Q
    ||   ||||||||||||    
T  13283847 acctgcatatcgatcca 13283831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 5765449 - 5765332
Alignment:
Q  92 taagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||||| || |||||||   ||||||||||| ||    
T  5765449 taagacaattgttgtagttggaaggtgcattccctacctaatcacgatcttctggcggaatcagacggttgataatatcttcatttgatctcagcaacgt 5765350  T
Q  192 gacaaacatatcgatcca 209  Q
     ||   ||||||||||||    
T  5765349 tacccgcatatcgatcca 5765332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 16081609 - 16081462
Alignment:
Q  10 tttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagt 109  Q
    ||||||||||||||||||| |||||||||||||||  || ||  |||  ||| |||||||| |  ||| || ||| ||||| |||||||||||||||||     
T  16081609 tttttgaaaggaacaataggacttctaggtgaatgtttgggaactgtcatttgacaagtttaaatttaccccattttagag-taagacaattgttgtagc 16081511  T
Q  110 tggaaagtgcattctctacctaatcacgatcttctggcggaatcaaact 158  Q
    ||||| |||||||| ||||||||||||||||||| ||| |||| |||||    
T  16081510 tggaaggtgcattccctacctaatcacgatcttccggcagaattaaact 16081462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 24363764 - 24363845
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttca 174  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||  |||||||||||| |||| || |||||||    
T  24363764 aagacaattgttgtagttggaaggtgcattccctacctaatcacgatcttctaacggaatcaaactcttgataatatcttca 24363845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 17697288 - 17697172
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtg 192  Q
    ||||||| |||||||||||||| ||||||||  ||||||||||||||||||||||||||||| ||| |||| || |||||||   ||||||||||| ||     
T  17697288 aagacaactgttgtagttggaaggtgcattccttacctaatcacgatcttctggcggaatcagactcttgataatatcttcagttgatctcagcaacgtc 17697189  T
Q  193 acaaacatatcgatcca 209  Q
    ||   ||||||||||||    
T  17697188 acccgcatatcgatcca 17697172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 16532051 - 16532171
Alignment:
Q  90 ggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaat 189  Q
    |||||||||||||||||||||||||  |||||||  ||||||||||||||||||| ||| ||||| ||| |||| || |||||||   |||||||||||     
T  16532051 ggtaagacaattgttgtagttggaagatgcattccatacctaatcacgatcttctagcgaaatcagactattgataatatcttcagttgatctcagcaac 16532150  T
Q  190 gtgacaaacatatcgatccat 210  Q
    || |||  |||||| ||||||    
T  16532151 gttacacgcatatcaatccat 16532171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 19262409 - 19262492
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcc 208  Q
    |||||||||||  |||||| |||||||||||||||||||||| |||||||   ||||||||||| ||||||||||||| |||||    
T  19262409 ctacctaatcataatcttcaggcggaatcaaactgttgagaatatcttcagttgatctcagcaacgtgacaaacatattgatcc 19262492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 16081724 - 16081827
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| |||||||||  |||||  ||||||||| |||||||||||||||  ||| |||||  ||| || ||| ||||||||||| |||||||||||||    
T  16081724 ttttgaatggaacaataacacttccgggtgaatgcttgagagttgttgtttcgcaaatttgaatttaccccattttagaggtaagataattgttgtagtt 16081823  T
Q  111 ggaa 114  Q
    ||||    
T  16081824 ggaa 16081827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 3658722 - 3658584
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    ||||||||||| |||||||||||||||| |  | || | ||||||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||    
T  3658722 agaggtaagacgattgttgtagttggaatgcaccttaccctacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcag 3658623  T
Q  186 caatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    ||| || ||   ||||||||||||  ||||| |||||||    
T  3658622 caacgttacttgcatatcgatccactagaacatgttgtg 3658584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 13973170 - 13973068
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||| ||||||||||||||| ||||  | ||||||||  |||||||||||    
T  13973170 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttatggcggaatcaaacttttgatgatatcttcaattgatctcagcaa 13973071  T
Q  189 tgt 191  Q
    |||    
T  13973070 tgt 13973068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 31451860 - 31451764
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgta 107  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||| ||||  | ||||||  ||| || |||  |||||||| ||||||||||||    
T  31451860 ttttgaaaggaacaatagaacttcggggtgaatgcttgagagttgttatttagtaggtttgaatttaccctatttcagaggtaacacaattgttgta 31451764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 15471721 - 15471638
Alignment:
Q  141 ttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    |||||||  ||||||||| ||||||| ||||||| ||||||||||||| |||||||||| ||| ||||| | |||| |||||||    
T  15471721 ttctggcataatcaaactcttgagaatatcttcaggcgatctcagcaacgtgacaaacacatcaatccacgggaacatgttgtg 15471638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 35576588 - 35576465
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||||||||||||||||||||||||||| |  | || | ||| ||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||    
T  35576588 agaggtaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcag 35576489  T
Q  186 caatgtgacaaacatatcgatcca 209  Q
    ||| || ||   ||||||||||||    
T  35576488 caacgtcacccgcatatcgatcca 35576465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 46180237 - 46180360
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||||||||||||||||||||||||||| |  | || | ||| ||||| ||||||||||||| ||||||| |||||||  | ||||||||  |||||||     
T  46180237 agaggtaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttctggcagaatcaagctgttgatgatatcttcaattgatctcaa 46180336  T
Q  186 caatgtgacaaacatatcgatcca 209  Q
    ||| || ||  |||||||||||||    
T  46180337 caacgttacccacatatcgatcca 46180360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 50068216 - 50068339
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||| ||||||||||||||||||||||| |  | || ||||| ||||| ||||||||||||||||||||| |||||||  | |||||||   ||||||||    
T  50068216 agagctaagacaattgttgtagttggaatgcaccttactctaactaatgacgatcttctggcggaatcaagctgttgacgatatcttcagttgatctcag 50068315  T
Q  186 caatgtgacaaacatatcgatcca 209  Q
    ||| || ||   ||||||||||||    
T  50068316 caacgttacccgcatatcgatcca 50068339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 6436018 - 6435898
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||| |||    
T  6436018 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcacttgatctcaacaa 6435919  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||  |||||||||||||    
T  6435918 cgtcactcacatatcgatcca 6435898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 45689380 - 45689266
Alignment:
Q  75 ttatccaattctagaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttc 173  Q
    ||||||||||  |||||||||||||||||||||||||||| |  | || | ||| ||||| |||||||| |||||||||||| |||||||  | ||||||    
T  45689380 ttatccaatttcagaggtaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttatggcggaatcaagctgttgatgatatcttc 45689281  T
Q  174 aagcgatctcagcaa 188  Q
    |   |||||||||||    
T  45689280 agttgatctcagcaa 45689266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 14772352 - 14772291
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttga 72  Q
    ||||||||||||||||||||||||   ||||||||||||||| ||||||||| || ||||||    
T  14772352 ttttgaaaggaacaatagaacttccgtgtgaatgcatgagagctgttgtttagcaggtttga 14772291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 18842894 - 18842994
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| |||||||||||| |    ||||||||| |||||| ||||||||| |||||||||  ||| || |||| || |||||||||||||||||||||    
T  18842894 ttttgaatggaacaatagaaatgtcgggtgaatgcttgagagatgttgtttagcaagtttgaatttaccccattc-aggggtaagacaattgttgtagtt 18842992  T
Q  111 gg 112  Q
    ||    
T  18842993 gg 18842994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 14173718 - 14173838
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctc----tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||      |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  14173718 aagacaattgttgtagctggaaggtgcattcataccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 14173817  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  14173818 cgtcacccgcatatcgatcca 14173838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 35185217 - 35185097
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctct----acctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  |    ||||||| |||||||||||||||||||||||| ||||  | ||||||||  ||| |||||||    
T  35185217 aagacaattgttgtagctggaaggtgcattcattccgcacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcaattgatttcagcaa 35185118  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  35185117 cgtcacctgcatatcgatcca 35185097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 36909807 - 36909687
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc----tctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    ||||||| |||||||| ||||| ||||||||    | |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  36909807 aagacaactgttgtagctggaaggtgcattcattctgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 36909708  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  36909707 cgtcacccgcatatcgatcca 36909687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 48706929 - 48706996
Alignment:
Q  149 gaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaac 216  Q
    |||||||||| ||||||| |||||||  |||||||||||| || ||| ||||||||||||||| ||||    
T  48706929 gaatcaaactcttgagaatatcttcagacgatctcagcaacgtaacatacatatcgatccatgggaac 48706996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 49396950 - 49396881
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaact 158  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| ||||||||||||||||||||||||    
T  49396950 aagacaattgttgtagctggaaggtgcattcattccatacctaatgacgatcttctggcggaatcaaact 49396881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 17372970 - 17372904
Alignment:
Q  93 aagacaattgttgtagttggaaagtgca-ttctctacctaatcacgatcttctggcggaatcaaact 158  Q
    |||||||||||||||||||||| ||||| |||  |||||||| |||||||||||||| ||| |||||    
T  17372970 aagacaattgttgtagttggaaggtgcatttccatacctaatgacgatcttctggcgaaattaaact 17372904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 17686324 - 17686395
Alignment:
Q  96 acaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    ||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||    
T  17686324 acaattgttgtagctggaaggtgcattcattcgatacctaatgacgatcttctggcggaatcaaacttttga 17686395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 23342887 - 23342813
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||| ||||||||||| ||||    
T  23342887 aagacaattgttgtagctggaaggtgcattcattcggtacctaatgacgatcttctggaggaatcaaacttttga 23342813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 35586929 - 35587009
Alignment:
Q  129 ctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    ||||| |||||||||||||||||||||||| ||||  | ||||||||  ||||||||||| || ||   ||||||||||||    
T  35586929 ctaatgacgatcttctggcggaatcaaacttttgatgatatcttcaattgatctcagcaaggtcacccgcatatcgatcca 35587009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 49926377 - 49926460
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||||| || ||   ||||||||||||    
T  49926377 tacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaacgtcacctgcatatcgatcca 49926460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 17685835 - 17685770
Alignment:
Q  57 tgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||| |||||||||  |||||| |||| |||||||||| ||||||||||||||||| || |||||    
T  17685835 tgtttagcaagtttgaatttatcccattc-agaggtaagataattgttgtagttggaaggtacattc 17685770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 37778288 - 37778226
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  37778288 tacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 37778226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 16097856 - 16097795
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttga 72  Q
    ||||||| |||||||||||  | |  ||||||||| |||||||||||||||| |||||||||    
T  16097856 ttttgaatggaacaatagagatgccgggtgaatgcttgagagttgttgtttagcaagtttga 16097795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 18170243 - 18170203
Alignment:
Q  117 tgcattctctacctaatcacgatcttctggcggaatcaaac 157  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  18170243 tgcattcggtacctaatgacgatcttctggcggaatcaaac 18170203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 18842649 - 18842565
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||||| |||||||||||||| |||| ||| |||| || |||||||   ||||||||||| || ||   ||||||||||||    
T  18842649 ctacctaatcccgatcttctggcgggatcagactcttgacaatatcttcagttgatctcagcaacgttacccgcatatcgatcca 18842565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 18842699 - 18842651
Alignment:
Q  93 aagacaattgttgtagttggaaagtgca-ttctctacctaatcacgatc 140  Q
    ||||||||| |||||||||||| ||||| ||| ||||||||||||||||    
T  18842699 aagacaattattgtagttggaaggtgcatttcactacctaatcacgatc 18842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 27034950 - 27034982
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  27034950 gtaagacaattgttgtagttggaatgtgcattc 27034982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 45689693 - 45689661
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  45689693 gtaagacaattgttgtagttggaatgtgcattc 45689661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 49598520 - 49598552
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  49598520 gtaagacaattgttgtagttggaatgtgcattc 49598552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 50067891 - 50067923
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  50067891 gtaagacaattgttgtagttggaatgtgcattc 50067923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 18441003 - 18440885
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatg 190  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||   ||||||||||| |    
T  18441003 gtaagacaattgttgtagttggaaggtgcattctctacctaatcacgatcttctggtggaatcaaactgttgataatatcttcagttgatctcagcaacg 18440904  T
Q  191 tgacaaacatatcgatcca 209  Q
    | ||| |||||||||||||    
T  18440903 ttacacacatatcgatcca 18440885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 19486077 - 19485959
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatg 190  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||   ||||||||||| |    
T  19486077 gtaagacaattgttgtagttggaaggtgcattctctacctaatcacgatcttctggtggaatcaaactgttgataatatcttcagttgatctcagcaacg 19485978  T
Q  191 tgacaaacatatcgatcca 209  Q
    | ||| |||||||||||||    
T  19485977 ttacacacatatcgatcca 19485959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 14265666 - 14265582
Alignment:
Q  88 gaggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatctt 172  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |||||||||||||| | ||||| |||||    
T  14265666 gaggtaagacaattgatgtagttggaaagtgcaatccctacctaatcacgatcttcaggcggaatcaaactctggagaatatctt 14265582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 774295 - 774417
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagc 186  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||| ||| ||||  | |||||||   |||||||||    
T  774295 agaggtaagacaattgttgcagttggaaggtgcattccctacctaatcacgatcttctggtggaatcagactcttgatgatatcttcagttgatctcagc 774394  T
Q  187 aatgtgacaaacatatcgatcca 209  Q
    || || ||   ||||||||||||    
T  774395 aacgttacccgcatatcgatcca 774417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 25887491 - 25887704
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||||||||||||| ||||||  ||||||||| || || | ||  | || |||||||||  |||||| |||  | ||||||||||||||||||||||    
T  25887491 ttttgaaaggaacaataaaacttccgggtgaatgcttgggact-gtcatatagcaagtttgaa-ttatcccatttcataggtaagacaattgttgtagtt 25887588  T
Q  111 ggaaagtgcattctctacc---taatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatc 207  Q
    |||| |||||||| |||||   |||||||||| |||| ||||||||||||||| ||||| |||||||   ||||||| ||| ||  || |||||| ||||    
T  25887589 ggaaggtgcattccctacctaataatcacgatattctagcggaatcaaactgtggagaatatcttcagttgatctcaacaacgttccacacatat-gatc 25887687  T
Q  208 catgagaacttgttgtg 224  Q
    || |||||| |||||||    
T  25887688 cacgagaacatgttgtg 25887704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 33449117 - 33449179
Alignment:
Q  96 acaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaact 158  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  33449117 acaattgttgtagttggaaggtgcattccctacctaattacgatcttctggcggaatcaaact 33449179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 20375843 - 20375959
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatg 190  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||||||| || |||||||||||||| ||||  |  ||||| ||  ||||||||||| |    
T  20375843 gtaagacaatttttgtagttggaaggtgcattccctacctaatcacgatattttggcggaatcaaacagttgttattatcttaaattgatctcagcaacg 20375942  T
Q  191 tgacaaacatatcgatc 207  Q
    | |||  ||||||||||    
T  20375943 ttacacgcatatcgatc 20375959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 6754463 - 6754365
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||| ||||||||||||||| ||||||| | |||| ||||||||||||||| || |||||| |||||||| || |||||||   |||||||||||    
T  6754463 gtaagacagttgttgtagttggaaggtgcatttccctacataatcacgatcttctagcagaatcagactgttgataatatcttcagttgatctcagcaa 6754365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 8633324 - 8633403
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttca 174  Q
    ||||||||||||||||||||   ||||||||  |||||||| |||||||||||||||||||| |||||||| || |||||||    
T  8633324 aagacaattgttgtagttggg--gtgcattcggtacctaatgacgatcttctggcggaatcagactgttgataatatcttca 8633403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 53826652 - 53826790
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    |||||||||||||||||||||||||||| |  | || | ||| ||||| |||||||||||||||||||||  ||||||  | |||||||   ||||||||    
T  53826652 agaggtaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttctggcggaatcaagttgttgatgatatcttcagttgatctcag 53826751  T
Q  186 caatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    ||| || |||  |||||||||||||  |||| |||||||    
T  53826752 caacgttacatgcatatcgatccattggaacatgttgtg 53826790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 6464305 - 6464424
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaat 189  Q
    |||||| | ||||||||||||||| ||||||| | |||  ||||||||||||||| || |||||| |||||||| || |||||||   |||||||||||     
T  6464305 gtaagagagttgttgtagttggaaggtgcatttccctatataatcacgatcttcttgcagaatcagactgttgataatatcttcagttgatctcagcaac 6464404  T
Q  190 gtgacaaacatatcgatcca 209  Q
    || ||  |||||||||||||    
T  6464405 gttacccacatatcgatcca 6464424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 25887376 - 25887273
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| ||||||||||||||||  ||||||||  |||||||||| ||||| |||||||||  ||| |  |||  | |||||||| |||||||||||||    
T  25887376 ttttgaatggaacaatagaacttccgggtgaatgtttgagagttgtcgtttagcaagtttgaatttacctcatttcaaaggtaagataattgttgtagtt 25887277  T
Q  111 ggaa 114  Q
    ||||    
T  25887276 ggaa 25887273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 30192798 - 30192678
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||| ||||||||||||||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  30192798 aagaaaattgttgtagttggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 30192699  T
Q  189 tgtgacaaacatatcgatcca 209  Q
     || ||   ||||||||||||    
T  30192698 cgtcacccgcatatcgatcca 30192678  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 36721351 - 36721483
Alignment:
Q  96 acaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    ||||||||||||| ||||| ||||||||  ||  |||| ||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||||| ||    
T  36721351 acaattgttgtaggtggaaggtgcattcattcgataccaaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaacgt 36721450  T
Q  192 gacaaacatatcgatccatgagaacttgttgtg 224  Q
     || | ||||||||||||  ||||| |||||||    
T  36721451 caccagcatatcgatccactagaacatgttgtg 36721483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 51015537 - 51015438
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||  | |||||||   |||||||||||    
T  51015537 aagacaattgttgtagctggaaggtgcattcattcggtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 51015438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 51013237 - 51013311
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||    
T  51013237 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttga 51013311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 7954916 - 7954865
Alignment:
Q  89 aggtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatc 140  Q
    |||||| ||||||||||||||||||| |||||||| |||||| |||||||||    
T  7954916 aggtaatacaattgttgtagttggaaggtgcattccctacctgatcacgatc 7954865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 39416892 - 39417027
Alignment:
Q  75 ttatccaattctagaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttc 173  Q
    |||||| ||| ||||||||||||||||||||||||||||| |  | || | ||| ||||| |||||||||||||| |||||| || ||||  | ||||||    
T  39416892 ttatcccattttagaggtaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttctggcgaaatcaagctattgatgatatcttc 39416991  T
Q  174 aagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |   ||||||||||| || ||   ||||||||||||    
T  39416992 agttgatctcagcaacgttacccgcatatcgatcca 39417027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 10053236 - 10053308
Alignment:
Q  95 gacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||| ||||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||    
T  10053236 gacaattgttgtagctggaaggtgcattcattcagtacctaatgacgatcttctggcggaatcaaacttttga 10053308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 18441197 - 18441305
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| |||  |||||||||||  ||||||||  |||||| || | |||| |||||||||  |||||| |||  |||||||| |||||||||||||||    
T  18441197 ttttgaatggattaatagaacttccgggtgaatgtttgagagctgctatttagcaagtttgaatttatcccatttcagaggtaa-acaattgttgtagtt 18441295  T
Q  111 ggaaagtgca 120  Q
    |||| |||||    
T  18441296 ggaaggtgca 18441305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 19486271 - 19486379
Alignment:
Q  11 ttttgaaaggaacaatagaacttctaggtgaatgcatgagagttgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagtt 110  Q
    ||||||| |||  |||||||||||  ||||||||  |||||| || | |||| |||||||||  |||||| |||  |||||||| |||||||||||||||    
T  19486271 ttttgaatggattaatagaacttccgggtgaatgtttgagagctgctatttagcaagtttgaatttatcccatttcagaggtaa-acaattgttgtagtt 19486369  T
Q  111 ggaaagtgca 120  Q
    |||| |||||    
T  19486370 ggaaggtgca 19486379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 46414293 - 46414428
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||| | ||| ||||||||  ||  |||||||| |||||||||||||||||||||||| ||||  | ||||| |   |||||||||||    
T  46414293 aagacaattgttgtagctagaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttaagttgatctcagcaa 46414392  T
Q  189 tgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
     || ||   ||||||||||||  ||||| |||||||    
T  46414393 cgtcacccgcatatcgatccactagaacatgttgtg 46414428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 49218694 - 49218815
Alignment:
Q  89 aggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagca 187  Q
    ||||||||||||||||| |||||||| |  | || | ||| ||||| |||||||||||||||||||||  |||||| || |||||||   ||||||||||    
T  49218694 aggtaagacaattgttgcagttggaatgcactttaccctaactaatgacgatcttctggcggaatcaagttgttgataatatcttcagttgatctcagca 49218793  T
Q  188 atgtgacaaacatatcgatcca 209  Q
    | || ||   ||||||||||||    
T  49218794 acgtcactcgcatatcgatcca 49218815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 15637249 - 15637197
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattctctacctaatcacgatcttc 143  Q
    |||||||||||||||||||||||| ||| |||| ||||| ||| |||||||||    
T  15637249 gtaagacaattgttgtagttggaaggtgaattccctaccgaattacgatcttc 15637197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 41804162 - 41804088
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcattc--tc--tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||||| |  |||||||||||  ||  |||||||| |||||||||||||||||||||||| ||||    
T  41804162 aagacaattgttgtagctaaaaagtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttga 41804088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 42383315 - 42383191
Alignment:
Q  86 tagaggtaagacaattgttgtagttggaaagtgcattct-ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctca 184  Q
    ||||||||||||||||||||||||||||| |  | || | | | ||||| |||||||||||||||||||||  ||||||  | |||||||   |||||||    
T  42383315 tagaggtaagacaattgttgtagttggaatgcaccttgtcccaactaatgacgatcttctggcggaatcaacttgttgatgatatcttcagttgatctca 42383216  T
Q  185 gcaatgtgacaaacatatcgatcca 209  Q
    |||| || ||   ||||||||||||    
T  42383215 gcaacgttacccgcatatcgatcca 42383191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 48087507 - 48087631
Alignment:
Q  86 tagaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctca 184  Q
    ||||||||||||||||||||||||||||| |  | || | |||  |||| |||||||||||| |||||||| |||||||  | |||||||   |||||||    
T  48087507 tagaggtaagacaattgttgtagttggaatgcaccttaccctaattaatgacgatcttctggtggaatcaagctgttgatgatatcttcagttgatctca 48087606  T
Q  185 gcaatgtgacaaacatatcgatcca 209  Q
    |||| || ||   ||||||||||||    
T  48087607 gcaacgttacccgcatatcgatcca 48087631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 52569406 - 52569470
Alignment:
Q  127 acctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    ||||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||||||||    
T  52569406 acctaatgacgatcttctggcggaatcaaactcttgatgatatcttcagttgatctcagcaatgt 52569470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 4004049 - 4004120
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||||||||||||||||| |  | || ||||| ||||| ||||||||||||| |||||||||| ||||    
T  4004049 aagacaattgttgtagttggaatgcaccttactctaactaatgacgatcttctggcagaatcaaacttttga 4004120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 55206880 - 55206963
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||||||| |||||||||||||||||||||||| ||||  | |||||||   ||||||||||| || ||   ||||||||||||    
T  55206880 tacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaacgtcacccgcatatcgatcca 55206963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 7246317 - 7246280
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  7246317 tacctaatgacgatcttctggcggaatcaaacttttga 7246280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 47759887 - 47759924
Alignment:
Q  126 tacctaatcacgatcttctggcggaatcaaactgttga 163  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  47759887 tacctaatgacgatcttctggcggaatcaaacttttga 47759924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 2428744 - 2428627
Alignment:
Q  96 acaattgttgtagttggaaagtgcattc----tctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgt 191  Q
    ||||||||||||| || || ||||||||    | |||||||| |||||||||| ||||||||||||| ||||  | |||||||   ||||||||||| ||    
T  2428744 acaattgttgtagctgaaaggtgcattcattatgtacctaatgacgatcttctagcggaatcaaacttttgatgatatcttcagttgatctcagcaacgt 2428645  T
Q  192 gacaaacatatcgatcca 209  Q
     ||   ||||||||||||    
T  2428644 cacccgcatatcgatcca 2428627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 17267306 - 17267374
Alignment:
Q  141 ttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    ||||||| |||||||||| ||||||| ||||| | || |||||||||| || ||  |||||||||||||    
T  17267306 ttctggcagaatcaaactcttgagaatatctttaggcaatctcagcaacgtaacttacatatcgatcca 17267374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 25576223 - 25576255
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  25576223 gtaagacaattgttgtagttggaatgtgcattc 25576255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 27187843 - 27187879
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||||||| || |||||    
T  27187843 agaggtaagacaattgttgtagttggaaggtacattc 27187879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 42383549 - 42383608
Alignment:
Q  54 tgttgtttaacaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaa 114  Q
    ||||||||  |||||||||  ||||||||||| | || |||||||||||||||||||||||    
T  42383549 tgttgtttggcaagtttgaatttatccaattcaa-agataagacaattgttgtagttggaa 42383608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 42383638 - 42383606
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  42383638 gtaagacaattgttgtagttggaatgtgcattc 42383606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 44835119 - 44835151
Alignment:
Q  91 gtaagacaattgttgtagttggaaagtgcattc 123  Q
    |||||||||||||||||||||||| ||||||||    
T  44835119 gtaagacaattgttgtagttggaatgtgcattc 44835151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 5561 - 5462
Alignment:
Q  125 ctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatccatgagaacttgttgtg 224  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||| ||||||||||||| |||||||| |||| |||||||    
T  5561 ctacctaatctcgatcttctggcgaaatcaaactgttgagaatatcttcaggcgatctcaacaacgtgacaaacatattgatccatgggaacatgttgtg 5462  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 36860 - 36792
Alignment:
Q  141 ttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaatgtgacaaacatatcgatcca 209  Q
    |||| ||||||| ||||| ||||||| ||||||| ||||||||| ||| ||||||| ||||||||||||    
T  36860 ttctagcggaattaaactcttgagaatatcttcaggcgatctcaacaacgtgacaagcatatcgatcca 36792  T

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Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 64194 - 64098
Alignment:
Q  93 aagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcagcaa 188  Q
    |||||||||||||||||||||| || | || | ||||||||| |||||||||||| ||||||||||| ||||  | |||||||   |||||||||||    
T  64194 aagacaattgttgtagttggaatgtaccttaccctacctaatgacgatcttctggtggaatcaaacttttgatgatatcttcagttgatctcagcaa 64098  T

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Target: scaffold0192 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 17873 - 17996
Alignment:
Q  87 agaggtaagacaattgttgtagttggaaagtgcatt-ctctacctaatcacgatcttctggcggaatcaaactgttgagaacatcttcaagcgatctcag 185  Q
    ||||||||||||||||||||||||| || |  | || | ||| ||||| ||||||||||||||||||||| |||||||  | |||||||   ||||||||    
T  17873 agaggtaagacaattgttgtagttgaaatgcaccttaccctaactaatgacgatcttctggcggaatcaagctgttgatgatatcttcagttgatctcag 17972  T
Q  186 caatgtgacaaacatatcgatcca 209  Q
    ||| || ||   ||||||||||||    
T  17973 caacgttacccgcatatcgatcca 17996  T

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Target: scaffold0589 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 4780 - 4830
Alignment:
Q  63 acaagtttgaccttatccaattctagaggtaagacaattgttgtagttggaa 114  Q
    ||||||||||| ||| || |||||| ||||||||||||||||||||||||||    
T  4780 acaagtttgactttaccccattcta-aggtaagacaattgttgtagttggaa 4830  T

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