View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_high_4 (Length: 659)
Name: NF7687_high_4
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 44316448 - 44316068
Alignment:
| Q |
1 |
atgttggtgaaccaacttggtgaccccggcctaaggataaggaggtttggaggaagagacatcatgagtttccatctttctccatgttcataaacaatga |
100 |
Q |
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| T |
44316448 |
atgttggtgaaccaacttggtgaccatggcctaaggataaggaggtttggaggaagagagatcatgagtttccatctttctccatgttcataaacaatga |
44316349 |
T |
|
| Q |
101 |
caaataattgccatgtagcactccaacatatagaactagaaaaaccagcttcggatgacaaattattctccagccagcaagatctatgaagaagtgatta |
200 |
Q |
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| T |
44316348 |
caaataatttccatgtagcactccaacatatagaactagaaaaaccagcttcggatgacaaattattctccagccagcaagatctatgaagaagtgatta |
44316249 |
T |
|
| Q |
201 |
cggacatcaacatagactaaattgacgcaattgcattgtacaaggacagtcactcagcatgtggaaggtatgtgctgcaaattatgaagttgttgtttaa |
300 |
Q |
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| T |
44316248 |
cggacatcaacatagactaaattgacgcaattgcattgtacaaggacagtcactcagcatgtggaaggtatgtgatgcaaattatgaagttgttgtttaa |
44316149 |
T |
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| Q |
301 |
atgtcaaacaccaattttcaaattagtgactatgatttgttactcttttctcttgtgaattcctgatttcagaggaattaa |
381 |
Q |
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| T |
44316148 |
atgtcaaacaccaattttcaaattagtgactatgatttgttactcttttctcttgtgaattcctgatttcagaggaattaa |
44316068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 384 - 646
Target Start/End: Complemental strand, 44316018 - 44315756
Alignment:
| Q |
384 |
aaagaagtaatgtgggtatttcgagtcttgctttgagaggacaatgaattagannnnnnnnctttctccgtagcgttgctatgctcataaatgagtagta |
483 |
Q |
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| T |
44316018 |
aaagaagtaatgtgggtatttcgagtcttgctttgagaggacaatgaattagattttttttctttctccgtagcgttgctatgctcataaatgagtagta |
44315919 |
T |
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| Q |
484 |
aagagaaatgctatcagtacagtgacactataatgcttagcccagttaagtagaaaaatagttttgttatattgagattgactcttgctcttggaggatg |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44315918 |
aagagaaatgctatcagtacagtgacactataatgcttagcccaattaagtagaaaaatagttttgttatattgagattgactcttgctcttggaggatg |
44315819 |
T |
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| Q |
584 |
ctaaaacatttaggcattgaatcaccaaatgcacgagttatggacactattcaatggttgttt |
646 |
Q |
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| T |
44315818 |
ctaaaacatttagactttgaatcaccaaatgcacgagttatggacactattcaatggttgttt |
44315756 |
T |
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