View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_high_7 (Length: 450)
Name: NF7687_high_7
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Original strand, 39000468 - 39000888
Alignment:
| Q |
15 |
tttgctttgcttgataatgcagcttccgtatttagtgcataatttcctccactcatagtattggtgttggaggacccacttgccactatcttcattatca |
114 |
Q |
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| T |
39000468 |
tttgctttgcttgataatgcagcttccgtatttagtgcataatttcctccactcatagtattggtgttggaggacccacttgccactatcttcattatca |
39000567 |
T |
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| Q |
115 |
ctcattccactcaatctttcaatagataccatccctatgctttaagacaatatatttggtttctttcttaggggctttatgcttaaagctaaattgtcct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39000568 |
ctcattccactcaatctttcaatagataccatccctatgctttaagacaatatatttggtttctttcttaggggctttatgcttaaagctaaattatcct |
39000667 |
T |
|
| Q |
215 |
tggtagtggtaatgtaataagtttgtaagacgatatggatcatcatctcttttctatatttcattttggcttaacaattatttaatcttccatgagggtt |
314 |
Q |
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| T |
39000668 |
tggtagtggtaatgtaataagtttgtaagacgatatggatcatcatctcttttctatatttcattttggcttaacaattatttaatcttccatgagggtt |
39000767 |
T |
|
| Q |
315 |
tgttcatgtcaaatatggaaatactgcattaccaagataatgaatttaataacctgtcttgcgtttttaaacattgaaaatgattggagaggtattgttc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39000768 |
tgttcatgtcaaatatggaaatactgcattaccaagataatgaatttaataacttgtcttgcgtttttaaacattgaaaatgattggagaggtattgttc |
39000867 |
T |
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| Q |
415 |
aaccaaacataatcatataac |
435 |
Q |
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| T |
39000868 |
aaccaaacataatcatataac |
39000888 |
T |
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