View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_10 (Length: 417)
Name: NF7687_low_10
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Original strand, 10253531 - 10253928
Alignment:
| Q |
15 |
acttcccaactccaatccactcataatttcaaacttcgctaccatatgaaaacaaaatcacaggtagaaatgt--tggaaatcctcaacaactattgact |
112 |
Q |
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| T |
10253531 |
acttcccaactccaatccactcataatttcaaacttcgctaccatatgaaaacaaaatcacaggtagaaatgtgttggaaatcctcaacaactattgact |
10253630 |
T |
|
| Q |
113 |
tttggtacaaaagagtgccaagtcattactaattcaagattgagacatgcagctgtgagtggattcactaagatcacgactagtataaaagcatcaagtc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
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| T |
10253631 |
tttggtacaaaagagtgccaagtcattactaattcaagattgagacatgcagctgtgagtggattcactaagatcacgactagtataaaaggagctggtc |
10253730 |
T |
|
| Q |
213 |
agtcttgtgtcttatgcaccaaattataagtcactaacatggcttcctcaaactttctaatgctgctcctttttgctctctttgtcatccctaaggggct |
312 |
Q |
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| T |
10253731 |
acacttgtattttatgcaccaaattataagtcactaacatggcttcctcaaactttctaatgatgctcctctttgctctctttgtcatccctaaggggtt |
10253830 |
T |
|
| Q |
313 |
tgccaactacgagaaacctccagagtatcatccaccagttgaaaatcccccattttataaaccaccggtagagaaaccacctgtgtataaaccaccaa |
410 |
Q |
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| T |
10253831 |
tgccaactacgagaaacctccagagtatcatccaccagttgaaaatcccccattttataaaccaccggtagagaaaccacctgtgtataaaccaccaa |
10253928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 55 - 318
Target Start/End: Original strand, 10216751 - 10217020
Alignment:
| Q |
55 |
accatatgaaaacaaaatcacaggtaga-aatgttggaaatcctcaacaactattgacttttggtacaaaagagtgccaagtcattactaattcaagatt |
153 |
Q |
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| T |
10216751 |
accatatgaaaacaaaatcgtaggtaaataatgtagaaaatcagcaacaaccattgacttttgttataagagagtgccaagtcattaccttatcaagatt |
10216850 |
T |
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| Q |
154 |
gagacatgcagctgtga----gtggattcactaagatcacgactagtataaaagcatcaagtcagtcttgtgtcttatgcaccaaa-ttataagtcacta |
248 |
Q |
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||| || |||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| | ||||||||||| |
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| T |
10216851 |
gagtcaggcagctgtgactgagtggtttcactaagatcacgactagtataaaagcagcaagtcactcttgtgttttatgcaccaaactcataagtcacta |
10216950 |
T |
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| Q |
249 |
acatggcttcctcaaactttctaatgctgctcctttttgctctctttgtcatccctaaggggcttgccaa |
318 |
Q |
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| T |
10216951 |
acatggcttcctcaaactttttagtgctgcttctttttgctctctttgctatccctcggggtcttgccaa |
10217020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 10278182 - 10278342
Alignment:
| Q |
100 |
acaactattgacttttggtacaaaag-agtgccaagtcattactaattcaagattgagacatgcagctgtgagtggattcactaagatcacgactagtat |
198 |
Q |
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| T |
10278182 |
acaactattgatttatggtacaaaaatagtgccaagtcattaccaattcaagactgagacatgcagctgattgtggattcactaagatcacgactagtat |
10278281 |
T |
|
| Q |
199 |
aaaagcatcaagtcagtcttgtgtcttatgcaccaaattataagtcactaacatggcttcc |
259 |
Q |
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| T |
10278282 |
aaaaggagctagtcactcttgtgttttatgcaccaaatcataagtcactaacatggcttcc |
10278342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 166 - 333
Target Start/End: Original strand, 10243192 - 10243360
Alignment:
| Q |
166 |
tgtgagtggattcactaagatcacgactagtataaaagcatcaagtcagtcttgtgtcttatgcaccaaatt-ataagtcactaacatggcttcctcaaa |
264 |
Q |
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||||||||||||||| |||||||||||||||||||||| | |||||| |||||||| || ||||||||| | ||||||||||||||||||||||||||| |
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| T |
10243192 |
tgtgagtggattcacaaagatcacgactagtataaaaggaggaagtcactcttgtgttttctgcaccaaactcataagtcactaacatggcttcctcaaa |
10243291 |
T |
|
| Q |
265 |
ctttctaatgctgctcctttttgctctctttgtcatccctaaggggcttgccaactacgagaaacctcc |
333 |
Q |
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||| ||| ||||||| ||||||||||| |||| ||| ||| |||| |||||||| || ||||| ||||| |
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| T |
10243292 |
cttcctagtgctgcttctttttgctctatttgccattcctcagggtcttgccaattatgagaagcctcc |
10243360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 10253952 - 10254016
Alignment:
| Q |
344 |
ccaccagttgaaaatcccccattttataaaccaccggtagagaaaccacctgtgtataaaccacc |
408 |
Q |
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| T |
10253952 |
ccacctgtagaaaatcctccaatttataaaccaccagtagagaaaccacccgtgtataaaccacc |
10254016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 409
Target Start/End: Original strand, 10254351 - 10254437
Alignment:
| Q |
323 |
gagaaacctccagagtatcatccaccagttgaaaatcccccattttataaaccaccggtagagaaaccacctgtgtataaaccacca |
409 |
Q |
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| T |
10254351 |
gagaaaccaccagtgtacaaaccacccgttgagaaacccccggtttataagccaccagtagagaaaccacctgtgtacaagccacca |
10254437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 10217091 - 10217156
Alignment:
| Q |
344 |
ccaccagttgaaaatcccccattttataaaccaccggtagagaaaccacctgtgtataaaccacca |
409 |
Q |
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| T |
10217091 |
ccaccggtagaaaaacctccagtttacaaaccaccggtagagaaaccaccagtgtacaagccacca |
10217156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 10254432 - 10254497
Alignment:
| Q |
344 |
ccaccagttgaaaatcccccattttataaaccaccggtagagaaaccacctgtgtataaaccacca |
409 |
Q |
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| T |
10254432 |
ccaccagttgagaagcccccaatttacaagccaccagtagagaaaccacctgtatacaagccacca |
10254497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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