View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7687_low_11 (Length: 375)
Name: NF7687_low_11
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 24 - 362
Target Start/End: Original strand, 11389915 - 11390253
Alignment:
| Q |
24 |
cgaagttgatgcgacactctacagtaagtgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacacat |
123 |
Q |
| |
|
|||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11389915 |
cgaagttgatgcaaccctcttcagtaactgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacacat |
11390014 |
T |
|
| Q |
124 |
actttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgctggc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11390015 |
actttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgcctgc |
11390114 |
T |
|
| Q |
224 |
ttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttagat |
323 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390115 |
ttaatttctacctgacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttagat |
11390214 |
T |
|
| Q |
324 |
ctacttccttatgaaaatcaaggtattgtggttccttct |
362 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11390215 |
ctacttccttatgaaaatcaaggtattctggttccttct |
11390253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 24 - 362
Target Start/End: Original strand, 11406576 - 11406914
Alignment:
| Q |
24 |
cgaagttgatgcgacactctacagtaagtgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacacat |
123 |
Q |
| |
|
|||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11406576 |
cgaagttgatgcaaccctcttcagtaactgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacacat |
11406675 |
T |
|
| Q |
124 |
actttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgctggc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11406676 |
actttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgcctgc |
11406775 |
T |
|
| Q |
224 |
ttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttagat |
323 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11406776 |
ttaatttctacctgacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttagat |
11406875 |
T |
|
| Q |
324 |
ctacttccttatgaaaatcaaggtattgtggttccttct |
362 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11406876 |
ctacttccttatgaaaatcaaggtattctggttccttct |
11406914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 24 - 363
Target Start/End: Complemental strand, 24253592 - 24253253
Alignment:
| Q |
24 |
cgaagttgatgcgacactctacagtaagtgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacacat |
123 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
24253592 |
cgaagttgatgcgacactcttcagtaagtgttatgtagtcctcctcagatgaatccattgttgttttcagcaattcttgcagaaaattgatgcagcacgg |
24253493 |
T |
|
| Q |
124 |
actttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgctggc |
223 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||| ||| ||||||||||||||||| ||||||||||| | ||| |||||||||||||||||| || |
|
|
| T |
24253492 |
actttgcttcgccatttcctcttttggcatatgaacttggtacttttcgaggatctggtgaagctccttgaattcttcagctacttctttctttgcttgc |
24253393 |
T |
|
| Q |
224 |
ttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttagat |
323 |
Q |
| |
|
||| ||| | ||| || |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| | ||| |||||| ||| || ||| |
|
|
| T |
24253392 |
ttagtttgtgcctgacgagtgtcttcccctacttcaatagcgttgatatgctcttattttccagttggttttggctcctgcggctcctgccgcttacgat |
24253293 |
T |
|
| Q |
324 |
ctacttccttatgaaaatcaaggtattgtggttccttctc |
363 |
Q |
| |
|
||| |||||| ||||| || |||||| ||||||| |||| |
|
|
| T |
24253292 |
ctatttccttctgaaactcgaggtatcctggttccatctc |
24253253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 24 - 364
Target Start/End: Complemental strand, 22567453 - 22567113
Alignment:
| Q |
24 |
cgaagttgatgcgacactctacagtaagtgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacacat |
123 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||| ||||||||| ||||||||| | || ||||||||| ||||||| ||||| |||||| || |
|
|
| T |
22567453 |
cgaagttaatgtgacactcttcagtaagtgatacgtagtcctccgcagatgaatcaattgctgttttcagtagttcttatagaaagttgatgttgcatgg |
22567354 |
T |
|
| Q |
124 |
actttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgctggc |
223 |
Q |
| |
|
|||||||||| |||||||| |||| |||| ||||| ||||||||||||||||||||| ||||||||||| | || ||| |||||||||||| | |
|
|
| T |
22567353 |
actttgcttcatcatttcctttactgtgatatgaacttggtatttttcgaggatctggtgaagctccttgaactcgtcatctaattctttctttgcctac |
22567254 |
T |
|
| Q |
224 |
ttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttagat |
323 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||| |||||||||| | | || |||| |
|
|
| T |
22567253 |
ttaatttctgcctggcgagtgtcttcccctacttcaatagcattgatctgctcatcttttccagttggttttgatttctgcagctcctgctgcttgagat |
22567154 |
T |
|
| Q |
324 |
ctacttccttatgaaaatcaaggtattgtggttccttctct |
364 |
Q |
| |
|
|||||||||| ||||| || |||||| ||||||||||||| |
|
|
| T |
22567153 |
ctacttccttctgaaactcgaggtatcttggttccttctct |
22567113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University