View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_14 (Length: 352)
Name: NF7687_low_14
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 180 - 341
Target Start/End: Complemental strand, 53319597 - 53319434
Alignment:
| Q |
180 |
ttattgatgctcccaacggggtgaaagtcgacttgattccagataaacttcaatttacagaaaatagcaaaacactgagctaccaaattattttctcctc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53319597 |
ttattgatgctcccaacggggtgaaagtcgacttgattccagataaacttcaatttacagaaaatagcaaaacactaagctaccaaattattttctcctc |
53319498 |
T |
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| Q |
280 |
--cactttaacctcaatgaaggaagatttgtttggatccattacatggagtaatggtaaatata |
341 |
Q |
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| T |
53319497 |
cacactttaacctcaatgaaggaagatttgtttggatccattacatggagtaatggtaaatata |
53319434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 53430882 - 53430725
Alignment:
| Q |
19 |
cattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaaggttatctcagaaaccgtccctgatagtttcagctgccccaaggat |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||| || ||||| || || |||||||| ||| |||| |||||||||| ||||| |||||| |||||| |
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| T |
53430882 |
cattgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttcaactgccctaaggat |
53430783 |
T |
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| Q |
119 |
tcgactcgtgatcttatttccaacatcaactacccttccatagcaatctccaacttca |
176 |
Q |
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| T |
53430782 |
tcgactcgtgatcatatttccaatattaattacccttccatagcaatctccaacttca |
53430725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 26095269 - 26095113
Alignment:
| Q |
19 |
cattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaaggttatctcagaaaccgtccctgatagtttcagctgccccaaggat |
118 |
Q |
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| T |
26095269 |
cattgactacttgaacttcttgtgttatataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgccctaaggat |
26095170 |
T |
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| Q |
119 |
tcgactcgtgatcttatttccaacatcaactacccttccatagcaatctccaacttc |
175 |
Q |
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||||| ||||||| ||||||||| ||||| ||||||||||| |||||||| |||||| |
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| T |
26095169 |
tcgacgcgtgatcatatttccaatatcaattacccttccatcgcaatctctaacttc |
26095113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 53422920 - 53422762
Alignment:
| Q |
19 |
cattgactacttgaacttcttgtgttacatgggatacaatacaacc-acgatcaaggttatctcagaaaccgtccctgatagtttcagctgccccaagga |
117 |
Q |
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| T |
53422920 |
cattgactacttgaactacttgtgttacctaggatacaatacaacccacaattaaggctatctcaaaaaccgtccctggtagtttcagttgccctaagga |
53422821 |
T |
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| Q |
118 |
ttcgactcgtgatcttatttccaacatcaactacccttccatagcaatctccaacttca |
176 |
Q |
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||| |||| ||||| ||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
53422820 |
ttcaactcctgatcatatttccaatatcaactatccttcaatagcaatctccaacttca |
53422762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 48374934 - 48375091
Alignment:
| Q |
19 |
cattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaaggttatctcagaaaccgtccctgatagtttcagctgccccaaggat |
118 |
Q |
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||||||||||||||| | |||||||||||| |||||||| |||||||| || |||||||| ||| |||| |||||||||| ||||| |||||||||||| |
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| T |
48374934 |
cattgactacttgaattacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccctgatactttcaactgccccaaggaa |
48375033 |
T |
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| Q |
119 |
tcgactcgtgatcttatttccaacatcaactacccttccatagcaatctccaacttca |
176 |
Q |
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|| |||| ||||| ||||||||| ||||| || |||||||||||||| |||||||||| |
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| T |
48375034 |
tcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttca |
48375091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 53307722 - 53307565
Alignment:
| Q |
19 |
cattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaaggttatctcagaaaccgtccctgatagtttcagctgccccaaggat |
118 |
Q |
| |
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|||||||||| | |||| |||||||||||| |||| |||||||||||| | ||| ||||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
53307722 |
cattgactacctaaactacttgtgttacataggattgaatacaaccacggtgaagattatctctaaaaccgcccctgatagtttcaactgccccaaggat |
53307623 |
T |
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| Q |
119 |
tcgactcgtgatcttatttccaacatcaactacccttccatagcaatctccaacttca |
176 |
Q |
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|| ||| ||||| | | || ||||||||||||||||||||||||||||||||||||| |
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| T |
53307622 |
tcaactattgatcatgtctcgaacatcaactacccttccatagcaatctccaacttca |
53307565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 341
Target Start/End: Complemental strand, 53422683 - 53422525
Alignment:
| Q |
183 |
ttgatgctcccaacggggtgaaagtcgacttgattccagataaacttcaatttacagaaaatagcaaaacactgagctaccaaattattttctcctccac |
282 |
Q |
| |
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|||||||||| | |||||||||||| | ||||||||||| ||||| ||||||||| ||| |||||||| | | ||||||||| |||||||||||| ||| |
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| T |
53422683 |
ttgatgctcctagtggggtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcaaaaaaataagctaccaagttattttctcctacac |
53422584 |
T |
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| Q |
283 |
tttaacctcaatgaaggaagatttgtttggatccattacatggagtaatggtaaatata |
341 |
Q |
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||||| | | |||| || ||| | |||||||||||||||||||| |||| |||||||| |
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| T |
53422583 |
tttaatcccgctgaacgatgatctctttggatccattacatggagaaatgataaatata |
53422525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 341
Target Start/End: Complemental strand, 53430646 - 53430491
Alignment:
| Q |
183 |
ttgatgctcccaacggggtgaaagtcgacttgattccagataaacttcaatttacagaaaatagcaaaacactgagctaccaaattattttctcctccac |
282 |
Q |
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|||||||||| | |||||||||||| | ||||||||||| ||||| ||||||||| ||| |||||| | | | ||||||||| ||| ||| ||||| |
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| T |
53430646 |
ttgatgctcctagtggggtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcaatagaataagctaccaagtta---tcttctccaa |
53430550 |
T |
|
| Q |
283 |
tttaacctcaatgaaggaagatttgtttggatccattacatggagtaatggtaaatata |
341 |
Q |
| |
|
||||||||| | ||||||||| | |||||||||||||||||||| |||| |||||||| |
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| T |
53430549 |
tttaacctcgctaaaggaagatctatttggatccattacatggagaaatgataaatata |
53430491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 48375244 - 48375328
Alignment:
| Q |
257 |
agctaccaaattattttctcctccactttaacctcaatgaaggaagatttgtttggatccattacatggagtaatggtaaatata |
341 |
Q |
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||||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
48375244 |
agctaccaagctattttctctactactttaacctcgttgaaggaagatctgtttggatccattacatggagtaacggtaaatata |
48375328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 341
Target Start/End: Complemental strand, 26095019 - 26094875
Alignment:
| Q |
197 |
ggggtgaaagtcgacttgattccagataaacttcaatttacagaaaatagcaaaacactgagctaccaaattattttctcctccactttaacctcaatga |
296 |
Q |
| |
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|||||||||||| | |||||||| || || |||||||||||| ||| ||||||| || ||||| ||| ||||||||||||| | |||||| ||| | | |
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| T |
26095019 |
ggggtgaaagtccagttgattccggagaagcttcaatttacaaaaagaagcaaaaaacaaagctatcaagttattttctcctctaatttaacatcactca |
26094920 |
T |
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| Q |
297 |
aggaagatttgtttggatccattacatggagtaatggtaaatata |
341 |
Q |
| |
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|||||||| | ||||||| |||||| ||||| | |||||| |||| |
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| T |
26094919 |
aggaagatctatttggattcattacttggagaagtggtaagtata |
26094875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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