View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_15 (Length: 338)
Name: NF7687_low_15
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 14598803 - 14598482
Alignment:
| Q |
1 |
accaatccaaatgaagatgcaatatggttatggctcatgtcaattacctgtgagatatggttcggcttttcatggatacttgaccaaattccaaagattt |
100 |
Q |
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| T |
14598803 |
accaatccaaatgaagatgcaatatggttatggctcatgtcaattacttgtgagatatggttcggcttttcatggatacttgaccaaattccaaagattt |
14598704 |
T |
|
| Q |
101 |
caccggttaaccgtagcactgaccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598703 |
caccggttaaccgtagcactgaccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtga |
14598604 |
T |
|
| Q |
201 |
cctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598603 |
cctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactc |
14598504 |
T |
|
| Q |
301 |
gcttgttatgtttcagatgatg |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
14598503 |
gcttgttatgtttcagatgatg |
14598482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 14609677 - 14609994
Alignment:
| Q |
5 |
atccaaatgaagatgcaatatggttatggctcatgtcaattacctgtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcacc |
104 |
Q |
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|||||||| |||| ||| ||||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
14609677 |
atccaaataaagaggcagtatggttgtgggttatgtcaattacttgtgagatatggttcggcttttcatggatacttgaccaaattccaaagctttctcc |
14609776 |
T |
|
| Q |
105 |
ggttaaccgtagcactgaccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctc |
204 |
Q |
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| T |
14609777 |
agttaatcgtagcactgacctagacgtccttcatgagaaattccacgttgtaaccccgacaaatcccacagcaagatctgatctgcctggttgtgacctc |
14609876 |
T |
|
| Q |
205 |
tttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgctt |
304 |
Q |
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|||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |
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| T |
14609877 |
tttgtgtcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgctt |
14609976 |
T |
|
| Q |
305 |
gttatgtttcagatgatg |
322 |
Q |
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|||||||||||||||||| |
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| T |
14609977 |
gttatgtttcagatgatg |
14609994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 311
Target Start/End: Complemental strand, 12194952 - 12194801
Alignment:
| Q |
160 |
ccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaatacca |
259 |
Q |
| |
|
|||| |||||| ||||||| ||||||||| || || ||| | |||||||||||||| ||||| ||||| ||||| || ||||| || || ||||||| |
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| T |
12194952 |
ccagcaaatccaacagggaaatctgatctcccgggaattgatatgtttgtgtcaactgccgatccagaaaaagagccaccccttgttaccgcaaatacca |
12194853 |
T |
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| Q |
260 |
ttctttccatattagcagttgattaccctgtggagaaactcgcttgttatgt |
311 |
Q |
| |
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||||||| || ||||||||||||||||||| || |||||||| |||||||| |
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| T |
12194852 |
ttctttcaattctagcagttgattaccctgttgataaactcgcatgttatgt |
12194801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 44632884 - 44633032
Alignment:
| Q |
174 |
agggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatatta |
273 |
Q |
| |
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|||||| |||||||| ||||| ||| ||||||| |||||||| ||||| ||||| ||||| |||||||||||||| || |||||| | || || | |
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| T |
44632884 |
agggaggtctgatctccctggaattgatgtctttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccattttatctatcctt |
44632983 |
T |
|
| Q |
274 |
gcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
322 |
Q |
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||||||||||| |||||||| ||| | ||||||||| | || ||||||| |
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| T |
44632984 |
gcagttgattatcctgtggaaaaagttgcttgttatttgtctgatgatg |
44633032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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