View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7687_low_17 (Length: 337)
Name: NF7687_low_17
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 26470496 - 26470805
Alignment:
| Q |
19 |
aacatttcaaatgacatttacatgagaaatctttagtatacacttgagacttatgcatctattatttggaccagaaaatataatgacgatcaaactaaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26470496 |
aacatttcaaatgacatttacatgagaaatctttagtatacacttgagacttatgcatctattatttggaccagaaaatataatgacgaggaaactaaaa |
26470595 |
T |
|
| Q |
119 |
aggctctgatcaaactaaaaagtggtggcaaattggacacgaattaagtatatattttgagcccttttaggtttagttgctttccaagtagaaaactaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26470596 |
aggctctgatcaaactaaaaagtggtggcaaattggacacgaattaagtatatattttgagcccttttaggtttagttgctttccaagtagaaaactaac |
26470695 |
T |
|
| Q |
219 |
aaagttcttgttcttgttttctttccaagtacaattctttctcttggctttaaagacaaacttcacggccagccatctctttcccacaaagttaggtccg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26470696 |
aaagttcttgttcttgttttctttccaagtacaattctttctcttggctttaaagaaaaacttcacggccagccatctctttcccacaaagttaggtccg |
26470795 |
T |
|
| Q |
319 |
ggccctgtgg |
328 |
Q |
| |
|
||| ||||| |
|
|
| T |
26470796 |
tgccatgtgg |
26470805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University