View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7687_low_18 (Length: 324)

Name: NF7687_low_18
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7687_low_18
NF7687_low_18
[»] chr5 (6 HSPs)
chr5 (159-306)||(39044859-39045006)
chr5 (163-260)||(7280469-7280566)
chr5 (95-134)||(39044796-39044835)
chr5 (97-134)||(6258129-6258166)
chr5 (160-210)||(36874327-36874377)
chr5 (97-129)||(20205782-20205814)
[»] chr4 (9 HSPs)
chr4 (163-306)||(25110016-25110159)
chr4 (161-260)||(45067144-45067243)
chr4 (160-260)||(3937865-3937965)
chr4 (160-210)||(47159819-47159869)
chr4 (97-135)||(27553330-27553368)
chr4 (97-134)||(29097389-29097426)
chr4 (97-134)||(31143245-31143282)
chr4 (97-129)||(16946467-16946499)
chr4 (170-210)||(51806230-51806270)
[»] chr3 (13 HSPs)
chr3 (160-260)||(43191237-43191337)
chr3 (160-260)||(3422910-3423010)
chr3 (160-210)||(52657154-52657204)
chr3 (160-210)||(579833-579883)
chr3 (163-210)||(52662047-52662094)
chr3 (160-205)||(13165816-13165861)
chr3 (178-306)||(30272755-30272884)
chr3 (97-134)||(51949502-51949539)
chr3 (164-210)||(47361928-47361974)
chr3 (97-134)||(45474772-45474809)
chr3 (97-129)||(47806307-47806339)
chr3 (97-129)||(48381148-48381180)
chr3 (97-129)||(54338675-54338707)
[»] chr2 (4 HSPs)
chr2 (170-260)||(465426-465516)
chr2 (97-135)||(2630179-2630217)
chr2 (97-134)||(31900846-31900883)
chr2 (97-130)||(40443769-40443802)
[»] chr7 (8 HSPs)
chr7 (160-260)||(18260999-18261099)
chr7 (159-260)||(33622974-33623075)
chr7 (164-260)||(33631083-33631179)
chr7 (160-208)||(11698436-11698484)
chr7 (160-199)||(7477761-7477800)
chr7 (97-135)||(18766795-18766833)
chr7 (97-129)||(7908258-7908290)
chr7 (97-133)||(33654288-33654324)
[»] chr8 (9 HSPs)
chr8 (160-260)||(28566360-28566460)
chr8 (160-260)||(28560862-28560962)
chr8 (172-210)||(1946081-1946119)
chr8 (97-135)||(44060811-44060849)
chr8 (160-245)||(28573983-28574068)
chr8 (97-134)||(34114849-34114886)
chr8 (97-130)||(35213518-35213551)
chr8 (97-129)||(9655767-9655799)
chr8 (97-129)||(28192685-28192717)
[»] chr6 (8 HSPs)
chr6 (160-210)||(1161837-1161887)
chr6 (160-260)||(7213113-7213213)
chr6 (165-306)||(35163985-35164125)
chr6 (97-131)||(11261568-11261602)
chr6 (97-130)||(7683644-7683677)
chr6 (97-130)||(17438736-17438769)
chr6 (163-207)||(3660549-3660593)
chr6 (97-129)||(9550606-9550638)
[»] scaffold0002 (1 HSPs)
scaffold0002 (160-205)||(141127-141172)
[»] chr1 (8 HSPs)
chr1 (97-132)||(5186522-5186557)
chr1 (97-135)||(45143872-45143910)
chr1 (97-129)||(7534267-7534299)
chr1 (97-129)||(15600391-15600423)
chr1 (178-210)||(19176980-19177012)
chr1 (97-129)||(19416276-19416308)
chr1 (97-129)||(19910929-19910961)
chr1 (97-129)||(39619747-39619779)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 39044859 - 39045006
Alignment:
Q  159 gttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaaca 258  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39044859 gttggtaaatggagataactttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaaca 39044958  T
Q  259 aataagaaagctactagcctcacaaacgaatcaccagaggttgcacct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39044959 aataagaaagctactagcctcacaaacgaatcaccagaggttgcacct 39045006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 7280566 - 7280469
Alignment:
Q  163 gtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaaa 260  Q
    |||||||||||||| ||| ||||||||| ||| ||||||||||||||| |||| || |||| | |||| ||| ||||||||| | ||||| |||||||    
T  7280566 gtaaatggagataacttttattaaccaacacagttattacaaactacatggaatcaggaaacatctaatcaaagaaacaagaactaagcttaaacaaa 7280469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 39044796 - 39044835
Alignment:
Q  95 tgaattgtgcataaatgcgtagaatattgtaaaaaatatt 134  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39044796 tgaattgtgcataaatgcgtagaatattgtaaaaaatatt 39044835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 6258166 - 6258129
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatt 134  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  6258166 aattgtgcataaatgtgtagaatattgtaaaaaatatt 6258129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 36874377 - 36874327
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactaca 210  Q
    ||||||||| |||| || ||||||||||||||| | |||||||||||||||    
T  36874377 ttggtaaatagagaaaactttcattaaccaaaatagttattacaaactaca 36874327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 20205814 - 20205782
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  20205814 aattgtgcataaatgtgtagaatattgtaaaaa 20205782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 306
Target Start/End: Complemental strand, 25110159 - 25110016
Alignment:
Q  163 gtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaaata 262  Q
    |||||| ||||||| |||| |||||||||||| ||||||||||||||| |||| | ||||| |||||||||| |||||||||||||| || |||| || |    
T  25110159 gtaaatagagataactttcgttaaccaaaacagttattacaaactacatggaatcgtgaaacacctaaacaaagaaacaagagccaaacttaaactaaca 25110060  T
Q  263 agaaagctactagcctcacaaacgaatcaccagaggttgcacct 306  Q
    ||||||||||||| |||||||||||||||  |||||||||||||    
T  25110059 agaaagctactagtctcacaaacgaatcattagaggttgcacct 25110016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 45067243 - 45067144
Alignment:
Q  161 tggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaaa 260  Q
    |||||||| ||||||| ||||| ||||||||| | ||||||||||||||| ||||||| |||| || ||||| | ||||||||||| || ||||||||||    
T  45067243 tggtaaatagagataactttcactaaccaaaatagttattacaaactacatggaagcaggaaacacttaaaccaagaaacaagagctaaactcaaacaaa 45067144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 3937865 - 3937965
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaa 259  Q
    ||||||||| ||||||  ||||||||||||||||| ||||||||||||||| |||| ||  ||| ||  |||| | ||||||||||| ||||||||||||    
T  3937865 ttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaacaa 3937964  T
Q  260 a 260  Q
    |    
T  3937965 a 3937965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 47159819 - 47159869
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactaca 210  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  47159819 ttggtaaatagagataaatttcactaaccaaaacatttattacaaactaca 47159869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 27553368 - 27553330
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatta 135  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  27553368 aattgtgcagaaatgtgtagaatattgtaaaaaatatta 27553330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 29097426 - 29097389
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatt 134  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  29097426 aattgtgcagaaatgtgtagaatattgtaaaaaatatt 29097389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 31143282 - 31143245
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatt 134  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  31143282 aattgtgcaaaaatgtgtagaatattgtaaaaaatatt 31143245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 16946499 - 16946467
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  16946499 aattgtgcataaatgtgtagaatattgtaaaaa 16946467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 51806230 - 51806270
Alignment:
Q  170 gagataaatttcattaaccaaaacaattattacaaactaca 210  Q
    ||||||| ||||||||||||||||| ||||||||| |||||    
T  51806230 gagataactttcattaaccaaaacagttattacaatctaca 51806270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 43191237 - 43191337
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaa 259  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||  | |||| || ||||| | ||||||||||| ||||||||||||    
T  43191237 ttggtaaatagagataactttcattaaccaaaacaattattacaaactacatggaataaggaaacacttaaaccaagaaacaagagctaagctcaaacaa 43191336  T
Q  260 a 260  Q
    |    
T  43191337 a 43191337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 3422910 - 3423010
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaa 259  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |||| || |||| ||  |||| | ||||||||||| ||||||||||||    
T  3422910 ttggtaaatagagataactttcattaaccaaaacagttattacaaactacatggaatcaggaaagactaaaaccaagaaacaagagctaagctcaaacaa 3423009  T
Q  260 a 260  Q
    |    
T  3423010 a 3423010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 52657154 - 52657204
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactaca 210  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52657154 ttggtaaatagagataaatttcattaaccaaaacaattattacaaactaca 52657204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 579883 - 579833
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactaca 210  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  579883 ttggtaaatagagataactttcattaaccaaaacaattattacaaactaca 579833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 52662047 - 52662094
Alignment:
Q  163 gtaaatggagataaatttcattaaccaaaacaattattacaaactaca 210  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||    
T  52662047 gtaaatagaggtaaatttcattaaccaaaacaattattacaaactaca 52662094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 13165861 - 13165816
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaa 205  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  13165861 ttggtaaatagagatatatttcattaaccaaaacaattattacaaa 13165816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 30272755 - 30272884
Alignment:
Q  178 tttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaaataagaa-agctactagc 276  Q
    ||||||||||||||||| ||||||||||||||| |||| ||  ||| ||  |||  | ||||||||||| ||||||||||||| || || | ||| ||||    
T  30272755 tttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaatcaagaaacaagagctaagctcaaacaaacaaaaagaactattagc 30272854  T
Q  277 ctcacaaacgaatcaccagaggttgcacct 306  Q
    ||| ||  ||||||| ||||| ||||||||    
T  30272855 ctcgcacccgaatcatcagagtttgcacct 30272884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 51949502 - 51949539
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatt 134  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  51949502 aattgtgcataaatgtgtagaatattgtaaaaaatatt 51949539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 47361974 - 47361928
Alignment:
Q  164 taaatggagataaatttcattaaccaaaacaattattacaaactaca 210  Q
    ||||| ||||||| ||||||||||||||||| | |||||||||||||    
T  47361974 taaatagagataactttcattaaccaaaacagtcattacaaactaca 47361928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 45474809 - 45474772
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatt 134  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  45474809 aattgtgcagaaatgtgtagaatattgtaaaaaatatt 45474772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 47806339 - 47806307
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  47806339 aattgtgcataaatgtgtagaatattgtaaaaa 47806307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 48381148 - 48381180
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  48381148 aattgtgcataaatgtgtagaatattgtaaaaa 48381180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 54338707 - 54338675
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  54338707 aattgtgcataaatgtgtagaatattgtaaaaa 54338675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 465426 - 465516
Alignment:
Q  170 gagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaaa 260  Q
    ||||||| ||||||||||||||||||||||||||||||||| | || || |||||||  |||| | ||||||||||| |||||||||||||    
T  465426 gagataactttcattaaccaaaacaattattacaaactacatgaaatcaggaaatactaaaaccaagaaacaagagctaagctcaaacaaa 465516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 2630217 - 2630179
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatta 135  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  2630217 aattgtgcagaaatgtgtagaatattgtaaaaaatatta 2630179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 31900846 - 31900883
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatt 134  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  31900846 aattgtgcagaaatgtgtagaatattgtaaaaaatatt 31900883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 40443802 - 40443769
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaa 130  Q
    ||||||||||||||| ||||||||||||||||||    
T  40443802 aattgtgcataaatgtgtagaatattgtaaaaaa 40443769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 18260999 - 18261099
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaa 259  Q
    ||||||||| ||||||| |||||||||||||||||  |||||||||||||| |||| || |||| ||  |||| | ||||||||||| ||||||||||||    
T  18260999 ttggtaaatagagataactttcattaaccaaaacagatattacaaactacatggaatcaggaaacactaaaaccaagaaacaagagctaagctcaaacaa 18261098  T
Q  260 a 260  Q
    |    
T  18261099 a 18261099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 33622974 - 33623075
Alignment:
Q  159 gttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaaca 258  Q
    |||||||||| ||||||  |||||||||||||||||  |||||||||||||| |||| ||  ||| ||  |||| | ||||||||||| |||||||||||    
T  33622974 gttggtaaatagagatatttttcattaaccaaaacagatattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaaca 33623073  T
Q  259 aa 260  Q
    ||    
T  33623074 aa 33623075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 33631083 - 33631179
Alignment:
Q  164 taaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaaa 260  Q
    ||||| ||||||| ||||||||||||||| | ||||||||||||||| |||| || |||| ||  |||| | ||||||||||  |||||||||||||    
T  33631083 taaatagagataactttcattaaccaaaagagttattacaaactacatggaatcaggaaagactaaaaccaagaaacaagagttaagctcaaacaaa 33631179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 11698436 - 11698484
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaacta 208  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  11698436 ttggtaaatagagataactttcattaaccgaaacaattattacaaacta 11698484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 7477761 - 7477800
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattat 199  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  7477761 ttggtaaatagagataactttcattaaccaaaacaattat 7477800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 18766833 - 18766795
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatta 135  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  18766833 aattgtgcaaaaatgtgtagaatattgtaaaaaatatta 18766795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 7908290 - 7908258
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  7908290 aattgtgcataaatgtgtagaatattgtaaaaa 7908258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 33654324 - 33654288
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatat 133  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  33654324 aattgtgcagaaatgtgtagaatattgtaaaaaatat 33654288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 28566360 - 28566460
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaa 259  Q
    ||||||||| ||||||| ||||||||||||| |||||||||| |||| ||| ||||  | |||| | |||||||| ||||||||||  ||||||||||||    
T  28566360 ttggtaaatagagataactttcattaaccaacacaattattataaaccacatggaattaggaaacaactaaacaaagaaacaagagttaagctcaaacaa 28566459  T
Q  260 a 260  Q
    |    
T  28566460 a 28566460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 28560862 - 28560962
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaa 259  Q
    ||||||||| ||||||| |||||||||||||  ||||||||| |||| | | ||||  | |||| | |||||||| ||||||||||  ||||||||||||    
T  28560862 ttggtaaatagagataactttcattaaccaacgcaattattataaaccagatggaattaggaaacaactaaacaaagaaacaagagttaagctcaaacaa 28560961  T
Q  260 a 260  Q
    |    
T  28560962 a 28560962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 1946081 - 1946119
Alignment:
Q  172 gataaatttcattaaccaaaacaattattacaaactaca 210  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  1946081 gataactttcattaaccaaaacaattattacaaactaca 1946119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 44060849 - 44060811
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatta 135  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  44060849 aattgtgcagaaatgtgtagaatattgtaaaaaatatta 44060811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 28573983 - 28574068
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagag 245  Q
    ||||||||| ||||||| |||||||||||||  ||||||||| |||| | | ||||  | |||| | |||||||| ||||||||||    
T  28573983 ttggtaaatagagataactttcattaaccaacgcaattattataaaccagatggaattaggaaacaactaaacaaagaaacaagag 28574068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 34114849 - 34114886
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatt 134  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  34114849 aattgtgcagaaatgtgtagaatattgtaaaaaatatt 34114886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 35213518 - 35213551
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaa 130  Q
    ||||||||||||||| ||||||||||||||||||    
T  35213518 aattgtgcataaatgtgtagaatattgtaaaaaa 35213551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 9655799 - 9655767
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  9655799 aattgtgcataaatgtgtagaatattgtaaaaa 9655767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 28192717 - 28192685
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  28192717 aattgtgcataaatgtgtagaatattgtaaaaa 28192685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 1161887 - 1161837
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactaca 210  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||||||    
T  1161887 ttggtaaatagagataactttcattaaccaaaacagttattacaaactaca 1161837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 7213113 - 7213213
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaa 259  Q
    ||||||||| ||||||  ||||||||| ||||||| ||||||||||||||| |||| ||  ||| ||  | || | ||||||||||| ||||||||||||    
T  7213113 ttggtaaatagagatatctttcattaatcaaaacagttattacaaactacatggaatcagaaaacactaacaccaagaaacaagagctaagctcaaacaa 7213212  T
Q  260 a 260  Q
    |    
T  7213213 a 7213213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 306
Target Start/End: Original strand, 35163985 - 35164125
Alignment:
Q  165 aaatggagataaatttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaaataag 264  Q
    |||| ||||||| ||||||||||||||||| |||||||||| || | |||| ||  ||  | ||| |||| ||||||| ||| ||| || |||||  |||    
T  35163985 aaatagagataactttcattaaccaaaacagttattacaaattagatggaatcagaaaccaactatacaaagaaacaaaagctaag-tctaacaaccaag 35164083  T
Q  265 aaagctactagcctcacaaacgaatcaccagaggttgcacct 306  Q
    ||||| |||||| |||||| ||||||| || || ||||||||    
T  35164084 aaagccactagcttcacaagcgaatcatcaaagtttgcacct 35164125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 11261568 - 11261602
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaat 131  Q
    ||||||||| |||||||||||||||||||||||||    
T  11261568 aattgtgcacaaatgcgtagaatattgtaaaaaat 11261602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 7683644 - 7683677
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaa 130  Q
    ||||||||||||||| ||||||||||||||||||    
T  7683644 aattgtgcataaatgtgtagaatattgtaaaaaa 7683677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 17438769 - 17438736
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaa 130  Q
    ||||||||||||||| ||||||||||||||||||    
T  17438769 aattgtgcataaatgtgtagaatattgtaaaaaa 17438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 3660593 - 3660549
Alignment:
Q  163 gtaaatggagataaatttcattaaccaaaacaattattacaaact 207  Q
    |||||| |||||| ||||||||||| ||||||| |||||||||||    
T  3660593 gtaaatagagatatatttcattaacaaaaacaaatattacaaact 3660549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 9550638 - 9550606
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  9550638 aattgtgcataaatgtgtagaatattgtaaaaa 9550606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 141127 - 141172
Alignment:
Q  160 ttggtaaatggagataaatttcattaaccaaaacaattattacaaa 205  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  141127 ttggtaaatagagatatatttcattaaccaaaacaattattacaaa 141172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 5186522 - 5186557
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaata 132  Q
    ||||||||||||||| ||||||||||||||||||||    
T  5186522 aattgtgcataaatgtgtagaatattgtaaaaaata 5186557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 45143910 - 45143872
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaaatatta 135  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  45143910 aattgtgcgtaaatgtgtagaatattgtaaaaaatatta 45143872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 7534299 - 7534267
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  7534299 aattgtgcataaatgtgtagaatattgtaaaaa 7534267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 15600391 - 15600423
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  15600391 aattgtgcataaatgtgtagaatattgtaaaaa 15600423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 19177012 - 19176980
Alignment:
Q  178 tttcattaaccaaaacaattattacaaactaca 210  Q
    |||||||||||||||||||||||| ||||||||    
T  19177012 tttcattaaccaaaacaattattataaactaca 19176980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 19416308 - 19416276
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  19416308 aattgtgcataaatgtgtagaatattgtaaaaa 19416276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 19910961 - 19910929
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  19910961 aattgtgcataaatgtgtagaatattgtaaaaa 19910929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 39619779 - 39619747
Alignment:
Q  97 aattgtgcataaatgcgtagaatattgtaaaaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  39619779 aattgtgcataaatgtgtagaatattgtaaaaa 39619747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University