View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_19 (Length: 323)
Name: NF7687_low_19
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 1798095 - 1798225
Alignment:
| Q |
116 |
gaatccatatcctgctatgttcataacttttataaattaaattttagttattctaatatataatttgatatcaattccatggttgatttgatattggaat |
215 |
Q |
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| T |
1798095 |
gaatccatatcctgctatgttcataacttttataaattaaattttggttattctaatatataatttgatatcaattccatggttgatttgatatttgaat |
1798194 |
T |
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| Q |
216 |
caaaatagttgaagaattatgggtgctgaga |
246 |
Q |
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| T |
1798195 |
gaggaaagttgaagaattatgagtgctgaga |
1798225 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1797980 - 1798041
Alignment:
| Q |
1 |
tttgtttctcttcaattccaatagattttcaattcttcatgcttcttattgtctaattcgtg |
62 |
Q |
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| T |
1797980 |
tttgtttcttttcaattccaatagattttcaattcttcagccttcttattgtgtaattcgtg |
1798041 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 4636548 - 4636675
Alignment:
| Q |
116 |
gaatccatatcctgctatgttcataacttttataaattaaattttagttattctaat----------atataatttgatatcaattccatggttgatttg |
205 |
Q |
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| T |
4636548 |
gaatccatatccttctatgttcatagcttttataaattaaatttttgttattctaatctaatactccatataagttgatatcatttccattgttgatttg |
4636647 |
T |
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| Q |
206 |
atattggaatcaaaatagttgaagaatt |
233 |
Q |
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| T |
4636648 |
attttggaatggaaaaagttgaagaatt |
4636675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 4644589 - 4644724
Alignment:
| Q |
116 |
gaatccatatcctgctatgttcataacttttataaattaaattttagttattcta-----atatataatttgatatcaattccatggttgatttgatatt |
210 |
Q |
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||||||||||| ||||||||| ||| ||||||||||||| ||||| ||||||||| ||||||| ||||||||| |||||| ||||||||||| || |
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| T |
4644589 |
gaatccatatcatgctatgtttatagcttttataaattatattttggttattctaatctaatatatatgttgatatcagttccattgttgatttgatttt |
4644688 |
T |
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| Q |
211 |
ggaatcaaaatagttgaagaattatgggtgctgaga |
246 |
Q |
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|||| ||| | |||||||||| | ||||||||| |
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| T |
4644689 |
tgaatggaaaaacttgaagaattgttagtgctgaga |
4644724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 30793893 - 30793999
Alignment:
| Q |
127 |
ctgctatgttcataacttttataaattaaattttagttattctaatatataatttgatatcaattccatggttgatttgatattggaatcaaaatagttg |
226 |
Q |
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||||||||||||||| |||||||||| |||| | |||||||||||||||||||| |||| | |||||||||||||||||| ||||||| | | ||||| |
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| T |
30793893 |
ctgctatgttcataa-ttttataaatgaaatcatggttattctaatatataattttatataagttccatggttgatttgattttggaatgaggaaagttg |
30793991 |
T |
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| Q |
227 |
aagaatta |
234 |
Q |
| |
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|||||||| |
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|
| T |
30793992 |
aagaatta |
30793999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 37433280 - 37433370
Alignment:
| Q |
127 |
ctgctatgttcataacttttataaattaaattttagttattcta--atatataatttgatatcaattccatggttgatttgatattggaat |
215 |
Q |
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|||||||||||| ||||| |||||||||||| | ||||||||| ||||||||||| |||| | || ||||||||||||||| ||||||| |
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| T |
37433280 |
ctgctatgttcacaacttatataaattaaatcatggttattctattatatataattttatataagtttcatggttgatttgattttggaat |
37433370 |
T |
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