View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_2 (Length: 809)
Name: NF7687_low_2
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-160; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 504 - 790
Target Start/End: Original strand, 43194670 - 43194956
Alignment:
| Q |
504 |
gcttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacaccacttctcctaacatgaacctca |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194670 |
gcttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacaccacttctcctaacatgaacctca |
43194769 |
T |
|
| Q |
604 |
tccttctctttcaaagatccaccatgtaactcttggcgtttctttctcttctcttcctccgtcaacgaaggatcattctcgatagcgcgaatagcagaga |
703 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194770 |
tccttctctttcaaagatccaccatgtaactcttggcgtttctttctcttctcttcctccgtcaacgaaggatcattctcgatagcgcgaatagcagaga |
43194869 |
T |
|
| Q |
704 |
caagatcccccgcaacagacggagcagcagaagcagcaacaacatcacttggttgagcacaatcaggacacaaccaatcgagcattt |
790 |
Q |
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| T |
43194870 |
caagatcccccgcaacagacggagcagcagaagcagcaacaacatcacttggttgagcacaatcaggacacaaccaatcgagcattt |
43194956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 292 - 421
Target Start/End: Original strand, 43194461 - 43194590
Alignment:
| Q |
292 |
ttaatttaataaaatcaaatatttaacacacttcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattc |
391 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194461 |
ttaatttaataaaatcaaatatttaacacatatcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattc |
43194560 |
T |
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| Q |
392 |
aatctcacaactaaaacacaatgtcactcc |
421 |
Q |
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| T |
43194561 |
aatctcacaactaaaacacaatgtcactcc |
43194590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 43194323 - 43194386
Alignment:
| Q |
154 |
aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgat |
217 |
Q |
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| T |
43194323 |
aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgat |
43194386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 43194305 - 43194395
Alignment:
| Q |
308 |
aaatatttaacacacttcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctca |
398 |
Q |
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|||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||| ||| |||| | |||||||||||||||| |
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| T |
43194305 |
aaatatttaacacatttcaagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctca |
43194395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 43194495 - 43194537
Alignment:
| Q |
154 |
aagttaagattgaaccgttcaggtaacctaaccaaaacaaact |
196 |
Q |
| |
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|||| ||||||||| ||||||| |||||||||||||||||||| |
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| T |
43194495 |
aagtcaagattgaatcgttcagataacctaaccaaaacaaact |
43194537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 575
Target Start/End: Complemental strand, 43193844 - 43193777
Alignment:
| Q |
508 |
acagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaag |
575 |
Q |
| |
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||||||||||||||||||||||||| | || || ||||||||||| || ||||| ||||||||||| |
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| T |
43193844 |
acagtaacaggtctctcaggcaactggatgcagaaggaacagttaaggctaccatcgaagatatcaag |
43193777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 582
Target Start/End: Complemental strand, 19105426 - 19105349
Alignment:
| Q |
505 |
cttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacacca |
582 |
Q |
| |
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|||||||||| ||||||||||| |||| | |||||| ||||| |||||||| |||||||| | |||||| |||||| |
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| T |
19105426 |
cttacagtaatgggtctctcaggtaactgtatacaaaaagaacaattaagactaccatcaaacacatcaagcacacca |
19105349 |
T |
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