View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_20 (Length: 321)
Name: NF7687_low_20
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 23070593 - 23070338
Alignment:
| Q |
8 |
atattattctactacctaaataaatcttgaaacctcattaaaatagagatatacacatacttcaatggatcatcaacatacattacaactgaacgttgtg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
23070593 |
atattattctactacctaaataaatcttgaaacctcattaaaataaagatatacacatacatccatggatcatcaacatacattacaactgaacgttgtg |
23070494 |
T |
|
| Q |
108 |
gaatctccttcatacatgtgcagtggttgtaaagagctaggttatggatctagtatccaatgtgaaaacagtaattgcaattacatcctccataaaggat |
207 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| || |
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| T |
23070493 |
gaatctgattcatacatgtgcagtttttgtaaagagctaggttatggatctagtatccactgtgaaaacagcaattgcaattacatactccataaagaat |
23070394 |
T |
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| Q |
208 |
gtgtaattgcaattgctgaatgtgatgcatacgccgttcatccatttttcaataaa |
263 |
Q |
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| T |
23070393 |
gtgcaattgcaattgctgaacgtgatgcatacgccgttcatccatttttcaataaa |
23070338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 23056810 - 23056693
Alignment:
| Q |
8 |
atattattctactacctaaataaatcttgaaacctcattaaaatagagatatacacatacttcaatggatcatcaacatacattacaactgaacgttgtg |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23056810 |
atattattctactacctaaataaatctttaaacctcattaaaattgagatatacacatacatcaatggatcatcaacatacattacaactgaacgttgtg |
23056711 |
T |
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| Q |
108 |
gaatctccttcatacatg |
125 |
Q |
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| T |
23056710 |
gaatctccttcatacatg |
23056693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 23085869 - 23085834
Alignment:
| Q |
17 |
tactacctaaataaatcttgaaacctcattaaaata |
52 |
Q |
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| T |
23085869 |
tactacctaaataaatcttgaaacctcattaaaata |
23085834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 8255820 - 8255681
Alignment:
| Q |
71 |
aatggatcatcaacatacattacaactgaacgttgtggaatctccttcatacatgtgcagtggttgtaaagagctaggttatggatctagtatccaatgt |
170 |
Q |
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||||||||||||||| |||||| ||||||| | | | | | ||||||| ||||| |||||||||||||||||||| | |||||||||| | ||| |
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| T |
8255820 |
aatggatcatcaacacacattaaaactgaatgattcaggagcaccttcatttatgtgtagtggttgtaaagagctagggtttggatctagttacagctgt |
8255721 |
T |
|
| Q |
171 |
gaaaacagtaattgcaattacatcctccataaaggatgtg |
210 |
Q |
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| T |
8255720 |
ggaaacagcaattgcaattacatcctccatgaagaatgtg |
8255681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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