View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7687_low_24 (Length: 297)
Name: NF7687_low_24
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 286
Target Start/End: Original strand, 41705947 - 41706210
Alignment:
| Q |
23 |
gcatcatcaattagaacaacaacaaccaagtcttatcgcagtagcattaagtggggccgactacacagagaatgtttaaaacacatgttaagataatttc |
122 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705947 |
gcatcatcaactagaacaacaacaaccaagtcttatcgcagtagtactaagtggggcctactacacagagaatgtttaaaacacatgttaagataatttc |
41706046 |
T |
|
| Q |
123 |
cttatccatcactattactactatatgtctgttgcttgatcagatggctattaacaaaacatgcactttcttaagaaactgttattacattccatttgat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41706047 |
cttatccatcactattactactatatgtctgttgcttgatcagatggctattaacaaaacatgcactttcttaagaaactgttattacattccatttgat |
41706146 |
T |
|
| Q |
223 |
agttgacatatataacagtagtatttagatattcaaaggttctagaaaaggtccccacaggttc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41706147 |
agttgacatatataacagtagtatttagatattcaaaggttctagaaaaggtccccacaagttc |
41706210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University