View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_27 (Length: 292)
Name: NF7687_low_27
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 19122078 - 19121804
Alignment:
| Q |
1 |
ctaaagcagccgagcgagagagatgattctttctcaaggccactaactcaaaatgtgagtggacaaaggcttaaatccgagtcacaatgcatagtaacac |
100 |
Q |
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| T |
19122078 |
ctaaagcaaccgagcgagaaagatgattctttctcaaggccactaactcaaaatgtgagtggacaaaggcttaaatccgagtcacaatgcatagtaacac |
19121979 |
T |
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| Q |
101 |
tggacaatgacgtgttacccatgatcttctgctctcaacgccaataattgttttgaagaatcagggaagaaacacaatccaaagttgagctgcgcacaat |
200 |
Q |
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| T |
19121978 |
tggacaatgacgtgttatccatgatcttctgctctcaacgccaataattgttttgaagaatcagggaagagacacaatccgaagttgagctacgcacaat |
19121879 |
T |
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| Q |
201 |
taaggggactttgtcaacggatactaacaaggagatgaagttgaagtcaaacgtggggctccacgatcccacttc |
275 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19121878 |
taagaggactttgtcaacggatactaacaaggagatgaagttgaagtcaaatgtggggctccacgatcccacttc |
19121804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 10943559 - 10943616
Alignment:
| Q |
2 |
taaagcagccgagcgagagagatgattctttctcaaggccactaactcaaaatgtgag |
59 |
Q |
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| T |
10943559 |
taaagcagccgagcgagggagatgactatttctcaaggccactaactcagtatgtgag |
10943616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 25591577 - 25591626
Alignment:
| Q |
11 |
cgagcgagagagatgattctttctcaaggccactaactcaaaatgtgagt |
60 |
Q |
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| T |
25591577 |
cgagcgaatgagttgattctttctcaagaccactaactcataatgtgagt |
25591626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 35413711 - 35413744
Alignment:
| Q |
24 |
tgattctttctcaaggccactaactcaaaatgtg |
57 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
35413711 |
tgattctttctcaaggccactaactcagaatgtg |
35413744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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