View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_30 (Length: 249)
Name: NF7687_low_30
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 45271255 - 45271032
Alignment:
| Q |
7 |
tttggtggtggtggtaatttgattgtagtgatgattctcattccctttctgtatcattgagtagctttcttctttcatttggggaaattctgcataaagt |
106 |
Q |
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| T |
45271255 |
tttggtggtggtggtaatttgattgtagtgatgattctcattccctttctgtatcattgagtagctt----ctttcatttggggaaattctgcataaagt |
45271160 |
T |
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| Q |
107 |
ggaagaataaatttatttatcatatgagaaaaggaattggaaagaaaattaaacaccaattaatcctactttgagatgttgaacaatttgtgttgtcttt |
206 |
Q |
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| T |
45271159 |
ggaagaataaatttatttgtcatatgagaaaaggaattggaaagaaaattaaacaccaattaatcctactttgagatgttgaacaatttgtgttgtcttt |
45271060 |
T |
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| Q |
207 |
atctgtctccctgaagatatgaacttgg |
234 |
Q |
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| T |
45271059 |
atctgtctccctgaagatatgaacttgg |
45271032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 16869324 - 16869119
Alignment:
| Q |
27 |
gattgtagtgatgattctcattccctttctgtatcattgagtagctttcttctttcatttggggaaattctgcataaagtggaagaataaatttatttat |
126 |
Q |
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| T |
16869324 |
gattgtagtaaagatttccattccttttctttatccttgagaagctt-cttctttcacttgggaaaattctgcatatgat--aagaatatatttatttgt |
16869228 |
T |
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| Q |
127 |
catatgagaaaaggaa-----ttggaaagaaaattaaacaccaattaatcctactttgagatgttgaacaatttgtgttgtctttatctgtctccctgaa |
221 |
Q |
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| T |
16869227 |
catatgaaaaaaataaataatttgaaatgaaaactaaacatcaattaatcatactttgagatgctgaacaatttgtgttgtcattgtctgtctctctaaa |
16869128 |
T |
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| Q |
222 |
gatatgaac |
230 |
Q |
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| T |
16869127 |
gatatgaac |
16869119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 16864400 - 16864197
Alignment:
| Q |
29 |
ttgtagtgatgattctcattccctttctgtatcattgagtagctttcttctttcatttggggaaattctgcataaagtg-gaagaataaatttatttatc |
127 |
Q |
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| T |
16864400 |
ttgtagtaatgatttccattccttttctttatccttgagaagctt-cttctttcacttgggaaaattctgcata---tgagaagaataaatttatctgtc |
16864305 |
T |
|
| Q |
128 |
atatgagaa----aaggaattggaaa-gaaaattaaacaccaattaatcctactttgagatgttgaacaatttgtgttgtctttatctgtctccctgaag |
222 |
Q |
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| T |
16864304 |
aattgaaaattataaataattttaaatgaaaactaaatatcaattaatcatactttgagatgctgaacaatttgtgttgtcattgtctgtctctctaaag |
16864205 |
T |
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| Q |
223 |
atatgaac |
230 |
Q |
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|| ||||| |
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| T |
16864204 |
atgtgaac |
16864197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 16874577 - 16874497
Alignment:
| Q |
150 |
gaaaattaaacaccaattaatcctactttgagatgttgaacaatttgtgttgtctttatctgtctccctgaagatatgaac |
230 |
Q |
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| T |
16874577 |
gaaaattaaaaatcaattgatcctactttgaaatgtagaacaattggtgttgtcattgtctgtctctctaaagatatgaac |
16874497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 17607069 - 17607007
Alignment:
| Q |
150 |
gaaaattaaacaccaattaatcctactttgagatgttgaacaatttgtgttgtctttatctgt |
212 |
Q |
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| T |
17607069 |
gaaaattaaaaatcaattcatcctactttgagatgttgaacactttttcttgtcattgtctgt |
17607007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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