View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_31 (Length: 248)
Name: NF7687_low_31
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 49 - 235
Target Start/End: Original strand, 2338214 - 2338407
Alignment:
| Q |
49 |
ttagaatatttatcacaaaatagacacattaaatacattgttagtatttatttatatatgtggaaatatagttattgagtagtaaatttc-------nnn |
141 |
Q |
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| T |
2338214 |
ttagaatatttatcgcaaaatagacacattaaatacattgttagtatttctttatatatgtggaaatatagttattgagtagtaaatttcaatttttttt |
2338313 |
T |
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| Q |
142 |
nnnnnnttgaatcctttaatctacttatggtgacttgataaatatgcagaacttgcataccccatggttgtgagtgaaaagtgcgatgtatata |
235 |
Q |
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| T |
2338314 |
ttttttttgcatcctttaatctacttatggtgacttgataaatttgcagaacttgcatacaccatggttgtgagtgaaaagtgcgatgtatata |
2338407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 49 - 235
Target Start/End: Original strand, 2330356 - 2330551
Alignment:
| Q |
49 |
ttagaatatttatcacaaaatagacacattaaatacattgttagtatttatttatatatgtggaaatatagttattgagtagtaaatttc---------n |
139 |
Q |
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| T |
2330356 |
ttagaatatttatcgcaaaatagacacattaaatacattgttagtatttctttatatatgtggaaatatagttattgagcagcaaatttcaattattatt |
2330455 |
T |
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| Q |
140 |
nnnnnnnnttgaatcctttaatctacttatggtgacttgataaatatgcagaacttgcataccccatggttgtgagtgaaaagtgcgatgtatata |
235 |
Q |
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| T |
2330456 |
ttttttttttgcatcatttaatctacatatggtgacttgataaatttgcagaacttgcatacaccatggttgtgagtgaaaagtgcgatgtatata |
2330551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 2321863 - 2321937
Alignment:
| Q |
161 |
tctacttatggtgacttgataaatatgcagaacttgcataccccatggttgtgagtgaaaagtgcgatgtatata |
235 |
Q |
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| T |
2321863 |
tctactaatggtgatttgatcaatatgcagaacttgcctatactatggttgtgagtgaaaagtgcgatgtatata |
2321937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 2330293 - 2330342
Alignment:
| Q |
5 |
aataaatttaatctgtttctctttcaaaggtatttttagaatatttagaa |
54 |
Q |
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| T |
2330293 |
aataaatttaatccgtttctctttcaaaggtatttttagaatatttagaa |
2330342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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