View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7687_low_34 (Length: 239)

Name: NF7687_low_34
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7687_low_34
NF7687_low_34
[»] chr7 (12 HSPs)
chr7 (1-223)||(2329924-2330146)
chr7 (1-223)||(2337823-2338045)
chr7 (67-218)||(1550474-1550625)
chr7 (59-218)||(2321431-2321590)
chr7 (67-218)||(1541240-1541391)
chr7 (67-218)||(3955232-3955383)
chr7 (66-218)||(1106238-1106390)
chr7 (67-218)||(1596295-1596446)
chr7 (66-217)||(1604626-1604777)
chr7 (67-218)||(1088889-1089040)
chr7 (67-218)||(3852741-3852892)
chr7 (67-218)||(1557184-1557335)
[»] scaffold0491 (2 HSPs)
scaffold0491 (67-218)||(5777-5928)
scaffold0491 (67-218)||(890-1041)
[»] chr8 (4 HSPs)
chr8 (67-218)||(18723284-18723435)
chr8 (67-218)||(18748936-18749087)
chr8 (67-218)||(18739011-18739162)
chr8 (67-218)||(18743975-18744126)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2330146 - 2329924
Alignment:
Q  1 aatgctcatgttatgtatcatatttaatggaaaaatgcaataataagataataaagaacaatgaaaaatttacctggagctatatatccaattgttccaa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2330146 aatgctcatgttatgtatcatatttgatggaaaaatgcaataataagataataaagaacaatgaaaaatttacctggagctatatatccaattgttccaa 2330047  T
Q  101 caactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactaggcttccactcagagtttagcaagatattgctagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  2330046 caactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactaggcttccactcagagtttagcaagatattgcccgt 2329947  T
Q  201 agatacatctctatgcacaatgg 223  Q
    |||||||||||||||||||||||    
T  2329946 agatacatctctatgcacaatgg 2329924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2338045 - 2337823
Alignment:
Q  1 aatgctcatgttatgtatcatatttaatggaaaaatgcaataataagataataaagaacaatgaaaaatttacctggagctatatatccaattgttccaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338045 aatgctcatgttatgtatcatatttaatggaaaaattcaataataagataataaagaacaatgaaaaatttacctggagctatatatccaattgttccaa 2337946  T
Q  101 caactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactaggcttccactcagagtttagcaagatattgctagt 200  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  2337945 caactatagttcgatttgatgaatcatattgaaggattcgagatgtgccaaagtcagaaacactaggcttccactccgagtttagcaagatattgccagt 2337846  T
Q  201 agatacatctctatgcacaatgg 223  Q
    |||||||||||||||||||||||    
T  2337845 agatacatctctatgcacaatgg 2337823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 1550474 - 1550625
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  1550474 aatttaccgggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggaatcgagctgtgccaaagtcagagacactag 1550573  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1550574 ccttccactcagagtttagcaagatattgctagtagatacatctctatgcac 1550625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 2321590 - 2321431
Alignment:
Q  59 caatgaaaaatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcaga 158  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||    
T  2321590 caatgaaaaatttaccaggagctatatatccaatggttccagcaactatagttcggtttgatgaatcatattgaaggagtcgagctgttccaaagtcaga 2321491  T
Q  159 aacactaggcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |||||    
T  2321490 aacactaggatgccactcagagtttagcaagatattgctggtagatacatctctgtgcac 2321431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 1541240 - 1541391
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||||||||||||||| ||||||  ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  1541240 aatttaccaggagctatatatccaatagttccagaaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccaaagtcagacacactag 1541339  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1541340 cctgccactcagagtttagcaagatattgctagtagatacatctcaatgcac 1541391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 3955232 - 3955383
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||||||||||||||| |||||| ||||||| ||| |||| ||||||||||||||||||||||||| | |||||||||||||||||||||    
T  3955232 aatttaccaggagctatatatccaatagttccaccaactattgtttgattagatgaatcatattgaaggagtcgagctatgccaaagtcagaaacactag 3955331  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
    ||| ||| || |||||||||||||||||||||||||||||||||||||||||    
T  3955332 gctgccattctgagtttagcaagatattgctagtagatacatctctatgcac 3955383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 1106390 - 1106238
Alignment:
Q  66 aaatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacacta 165  Q
    ||||||||| ||||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||  |||||     
T  1106390 aaatttaccaggagctatatatccaatagttccagcaactattgttcgattggatgaatcatattgaaggagtcgagctgtgccaaagtcagcgacactg 1106291  T
Q  166 ggcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
    | || |||||||||||||||||||||||||||| |||||||||||||||||||    
T  1106290 gcctgccactcagagtttagcaagatattgctactagatacatctctatgcac 1106238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 1596446 - 1596295
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1596446 aatttaccaggagctatatatccaatagttccagcaactatagttcgatttgatgaatcatattgaaggagtcgggatgtgccaaagtcacaaacactag 1596347  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
      | ||| ||||||||||| |||||||||||| |||||||||||||||||||    
T  1596346 catgccattcagagtttagtaagatattgctactagatacatctctatgcac 1596295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 1604777 - 1604626
Alignment:
Q  66 aaatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacacta 165  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  1604777 aaatttaccaggagctatatatccaatagttccagcaactatagttcgattggatgaattatattgaaggagtcgagctgtgccaaagtcacaaacacta 1604678  T
Q  166 ggcttccactcagagtttagcaagatattgctagtagatacatctctatgca 217  Q
    | || ||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  1604677 gcctgccactcatagtttagcaatatattgctactagatacatctctatgca 1604626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 1089040 - 1088889
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| |  ||||| |    
T  1089040 aatttaccaggagctatatatccaatagttccagcaactattgttcgattggatgaatcatattgaaggagtcgagctgtgccaaagtccgcgacactgg 1088941  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1088940 cctgccactcagagtttagcaagatattgctagtagatacatctcgatgcac 1088889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 3852892 - 3852741
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||||||||||||||| |||||| ||||||| |||||||| ||||||||| ||||||||||||||| | | |||||||||||||||||||    
T  3852892 aatttaccaggagctatatatccaatagttccagcaactattgttcgattggatgaatcacattgaaggagtcgagctataccaaagtcagaaacactag 3852793  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
    ||| ||| || |||||||| ||||||||||||||||||||||||||||||||    
T  3852792 gctgccattccgagtttagaaagatattgctagtagatacatctctatgcac 3852741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 1557184 - 1557335
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  1557184 aatttaccaggagcaatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccaaagtcacaaacactag 1557283  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     || |||||||||||| |  || ||||||||| |||||||||||||||||||    
T  1557284 cctgccactcagagttaacaaatatattgctactagatacatctctatgcac 1557335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 5777 - 5928
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||| |    
T  5777 aatttacccggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccgaagtcacaaacactgg 5876  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5877 cctgccactcagagtttagcaagatattgctagtagatacatctcgatgcac 5928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 890 - 1041
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |||| | |||| |||||| ||||||| |    
T  890 aatttacctggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagccgagctatgccgaagtcacaaacactgg 989  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  990 cctgccactcagagtttagcaagatattgctagtagatacatctcgatgcac 1041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 18723284 - 18723435
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||| |    
T  18723284 aatttacccggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccgaagtcacaaacactgg 18723383  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18723384 cctgccactcagagtttagcaagatattgctagtagatacatctcgatgcac 18723435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 18748936 - 18749087
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||| |    
T  18748936 aatttacccggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccgaagtcacaaacactgg 18749035  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18749036 cctgccactcagagtttagcaagatattgctagtagatacatctcgatgcac 18749087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 18739011 - 18739162
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |||| | |||| |||||| ||||||| |    
T  18739011 aatttacctggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagccgagctatgccgaagtcacaaacactgg 18739110  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18739111 cctgccactcagagtttagcaagatattgctagtagatacatctcgatgcac 18739162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 18743975 - 18744126
Alignment:
Q  67 aatttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactag 166  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |||| | |||| |||||| ||||||| |    
T  18743975 aatttacctggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagccgagctatgccgaagtcacaaacactgg 18744074  T
Q  167 gcttccactcagagtttagcaagatattgctagtagatacatctctatgcac 218  Q
     || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18744075 cctgccactcagagtttagcaagatattgctagtagatacatctcgatgcac 18744126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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