View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_6 (Length: 463)
Name: NF7687_low_6
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 53677328 - 53677706
Alignment:
| Q |
20 |
gtgagggggtgtaaacaggaccctgaactttgaagaagtgaacttgttcgtaatgataaagaagattcaaatagtgttttcttagtacaaaagaagcgct |
119 |
Q |
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| T |
53677328 |
gtgagggggtgtaaacaggaccctgaactttgaagaagtgaacttgttcgtaatgataaagaagattcaaatagtgttttcttagtacaaaagaagcgct |
53677427 |
T |
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| Q |
120 |
tgtagtagtagatgagaatctaaatacactacctacttctctccatttcttctctgcaacaacctgaaatttgaaaattattaactattatctaatttat |
219 |
Q |
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| T |
53677428 |
tgtagtagtagatgagaatctaaatacactacctacttctctccatttcttctctgcaacaacctgaaatttgaaaattattaactattatctaatttat |
53677527 |
T |
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| Q |
220 |
agtgcaaaaaatagtataaaacagtttaatcttataacgaagggagagaatccaccttctcataaccacttctccttgtaacttccacgtagagaacgtg |
319 |
Q |
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| T |
53677528 |
agtgcaaaaaatagtataaaacagtttaatcttataacgaagggagagaatccaccttctcataaccgcttctccttgtaacttccacgtagagaacgtg |
53677627 |
T |
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| Q |
320 |
caaatcaagctccttaccaccaatcacaggaatcctatgcaaaatgaaatcacatttataatagtactttgatgttgtt |
398 |
Q |
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| T |
53677628 |
caaatcaagctccttaccaccaatcacaggaatcctatgcaaaatgaaatcacatttataatagtactttgattttgtt |
53677706 |
T |
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