View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7687_low_8 (Length: 433)

Name: NF7687_low_8
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7687_low_8
NF7687_low_8
[»] chr2 (6 HSPs)
chr2 (17-425)||(15870295-15870703)
chr2 (90-198)||(45196540-45196648)
chr2 (296-383)||(18835986-18836073)
chr2 (316-369)||(17511485-17511538)
chr2 (307-359)||(2010434-2010486)
chr2 (128-220)||(21979637-21979729)
[»] chr4 (3 HSPs)
chr4 (89-277)||(53074260-53074448)
chr4 (120-175)||(48435839-48435894)
chr4 (307-339)||(52906437-52906469)
[»] chr3 (3 HSPs)
chr3 (321-368)||(24882240-24882287)
chr3 (316-385)||(47364811-47364880)
chr3 (307-339)||(13806160-13806192)
[»] chr7 (1 HSPs)
chr7 (297-339)||(29906649-29906691)
[»] chr1 (1 HSPs)
chr1 (89-138)||(1495853-1495902)


Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 15870295 - 15870703
Alignment:
Q  17 acttatgacatgttcatcagtataactgcgtatatgccaattggacttgttttgaggttttgtttttcttttcagattgctacattaatagcagtatatg 116  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870295 acttatgatatgttcatcggtataactgcgtatatgcgaattggacttgttttgaggttttgtttttcttttcagattgctacattaatagcagtatatg 15870394  T
Q  117 ccaactggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatcattttctatattcctcttgacattatcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870395 ccaactggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatcattttctatattcctcttgacattatcaa 15870494  T
Q  217 gtttgcaattcgctatggcttgagcggcaaagcttggacaaatcttcttgaaaacaaggtaattcccaaatttctagcagtttacttttcatgttttcgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870495 gtttgcaattcgctatggcttgagcggcaaagcttggacaaatcttcttgaaaacaaggtaattcccaaatttctagcagtttacttttcatgttttcgg 15870594  T
Q  317 ttttcattttcacttcaactaattgacataaactaatatagatcgaatattttcatcacaattttcttttgcattttttcgttgtttctgaaaatgtatt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870595 ttttcattttcacttcaactaattgacataaactaatatagatcgaatattttcatcacaattttcttttgcattttttcgttgtttctgaaaatgtatt 15870694  T
Q  417 cttcatatc 425  Q
    |||||||||    
T  15870695 cttcatatc 15870703  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 45196648 - 45196540
Alignment:
Q  90 agattgctacattaatagcagtatatgccaactggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatcat 189  Q
    ||||||| ||| | ||||| || ||||| || ||||  |||||||| ||  |||||||||| ||||| |||||||| ||||| ||||| ||||| || ||    
T  45196648 agattgccacactgatagctgtgtatgcaaattgggagtttgcaagtatgaaaggaattggatggggttgggcaggtgtcatttggctctacagcattat 45196549  T
Q  190 tttctatat 198  Q
    |||||||||    
T  45196548 tttctatat 45196540  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 18836073 - 18835986
Alignment:
Q  296 gtttacttttcatgttttcggttttcattttcacttcaactaattgacataaactaatatagatcgaatattttcatcacaattttct 383  Q
    |||||||||||||| || | ||||| ||||||||||||||||||  | ||||| ||||||||| | | |||| ||||||  |||||||    
T  18836073 gtttacttttcatgattcctgtttttattttcacttcaactaataaatataaaataatatagacccactattctcatcatcattttct 18835986  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 17511485 - 17511538
Alignment:
Q  316 gttttcattttcacttcaactaattgacataaactaatatagatcgaatatttt 369  Q
    ||||||||||||||||||||| ||  ||||||| ||||||||||| || |||||    
T  17511485 gttttcattttcacttcaactgataaacataaaataatatagatccaacatttt 17511538  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 2010486 - 2010434
Alignment:
Q  307 atgttttcggttttcattttcacttcaactaattgacataaactaatatagat 359  Q
    |||||||| |||||||||||| |||||||||||  ||||||  ||||||||||    
T  2010486 atgttttctgttttcattttctcttcaactaataaacataatataatatagat 2010434  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 21979729 - 21979637
Alignment:
Q  128 tttgcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatcattttctatattcctcttgacattatcaagttt 220  Q
    ||||| |||||| | |||||||| ||| ||||||| ||||| |||||| | ||||| || |||   || ||||||||||||||| ||||||||    
T  21979729 tttgctagaatcaatggaattgggtggagatgggctggagttatctggatctacagcattattacatacattcctcttgacattctcaagttt 21979637  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 89 - 277
Target Start/End: Complemental strand, 53074448 - 53074260
Alignment:
Q  89 cagattgctacattaatagcagtatatgccaactggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatca 188  Q
    |||||||||||  |||||||||||||||||||||||||||| ||||   | ||||||||||||||||| ||||||||||| |||||||| ||||| ||      
T  53074448 cagattgctaccataatagcagtatatgccaactggggattcgcaaaggtacaaggaattggttggggttgggcaggagtaatctggctctacagcattg 53074349  T
Q  189 ttttctatattcctcttgacattatcaagtttgcaattcgctatggcttgagcggcaaagcttggacaaatcttcttgaaaacaaggta 277  Q
    | ||||||||||| || ||| | || |||||||| || |||||    ||||| ||||| |||||||  ||||| || || |||||||||    
T  53074348 tcttctatattccactcgacgtgatgaagtttgccatccgctacatattgagtggcaaggcttggaacaatctcctagacaacaaggta 53074260  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 48435894 - 48435839
Alignment:
Q  120 actggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctgg 175  Q
    ||||||||||||| |||||| | |||||||||||| ||||||| ||||| ||||||    
T  48435894 actggggatttgctagaatcaatggaattggttggagatgggctggagtaatctgg 48435839  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 52906469 - 52906437
Alignment:
Q  307 atgttttcggttttcattttcacttcaactaat 339  Q
    |||||||| ||||||||||||||||||||||||    
T  52906469 atgttttctgttttcattttcacttcaactaat 52906437  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 24882287 - 24882240
Alignment:
Q  321 cattttcacttcaactaattgacataaactaatatagatcgaatattt 368  Q
    |||||||||||||||||||  ||||||| ||||||||||| |||||||    
T  24882287 cattttcacttcaactaataaacataaaataatatagatctaatattt 24882240  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 385
Target Start/End: Complemental strand, 47364880 - 47364811
Alignment:
Q  316 gttttcattttcacttcaactaattgacataaactaatatagatcgaatattttcatcacaattttcttt 385  Q
    ||||||||||||||||||||||||  |||||||  || ||| ||  ||||||||| |||| |||||||||    
T  47364880 gttttcattttcacttcaactaataaacataaaagaaaataaatttaatattttcctcaccattttcttt 47364811  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 13806192 - 13806160
Alignment:
Q  307 atgttttcggttttcattttcacttcaactaat 339  Q
    |||||||| ||||||||||||||||||||||||    
T  13806192 atgttttctgttttcattttcacttcaactaat 13806160  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 29906691 - 29906649
Alignment:
Q  297 tttacttttcatgttttcggttttcattttcacttcaactaat 339  Q
    ||||||| |||||||| | ||||||||||||||||||||||||    
T  29906691 tttacttctcatgtttactgttttcattttcacttcaactaat 29906649  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 1495902 - 1495853
Alignment:
Q  89 cagattgctacattaatagcagtatatgccaactggggatttgcaagaat 138  Q
    |||||||| ||||| |||||||| ||||| || |||||||||||||||||    
T  1495902 cagattgcaacatttatagcagtgtatgctaattggggatttgcaagaat 1495853  T

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