View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7687_low_9 (Length: 421)
Name: NF7687_low_9
Description: NF7687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7687_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 112 - 412
Target Start/End: Original strand, 34549326 - 34549625
Alignment:
| Q |
112 |
gtacttaaacttttgttaattcaagtannnnnnnattaattcgtaaataaacagcgcatagtctaacccctcaaattaagtatagaaccactttgtttaa |
211 |
Q |
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| T |
34549326 |
gtactttaacttttgttaattcaagt--ttttttattaattagtaaataaacagcgcatattctaacccctcaaattaagtatagaaccactttgtttaa |
34549423 |
T |
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| Q |
212 |
tggctcacgagtttgttgaggtaattcttaattgtctctttaatggaaaaatgtactatacttcactaaaatattatctcattcaaactaggcaattgga |
311 |
Q |
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| T |
34549424 |
tggctcacgagtttgttgaggtaattcttaattgtctctttaatggaaaaatgtactatacttcactaaaatattatctcattcaaactaggtaattgga |
34549523 |
T |
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| Q |
312 |
tttatctt-gtatatgatactctcaatctcgagatttaattttttaaaataaaatctcaacgtgtttttcttgtttataaataaaatcgtaattatattc |
410 |
Q |
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| T |
34549524 |
tttattttggtatatgatactctcaatctcgagatttaattttttaaaataaaatctccacgtgtttttcttgtttataaataaaatcgtaattattttc |
34549623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 34558538 - 34558637
Alignment:
| Q |
31 |
atgtaatataactcaataattataccaagactgtatatttcatgcataggcttgatgcatttgcttacttatatacacccagtacttaaacttttgttaa |
130 |
Q |
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|||| ||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
34558538 |
atgtgatataactcaataattatatcaagcatgtatgt--catgcataggcttgatgcatttgcttacttatatacaagcaggacttaaacttttgttaa |
34558635 |
T |
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