View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_high_10 (Length: 299)
Name: NF7688_high_10
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 54 - 290
Target Start/End: Original strand, 4274722 - 4274964
Alignment:
| Q |
54 |
tagctaaagattttccaacaatttcattcnnnnnnnnttacaatgattctccaccatggagtattcaaaataatccagtggttatcctaatggaccatca |
153 |
Q |
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| T |
4274722 |
tagctaaagattttccaacaatttcattcaaaaaaaattacaatgattctccaccatggagtattcaaaataatccagtggttatcctaatggaccatca |
4274821 |
T |
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| Q |
154 |
gatgatactaatagaacaacaccctgtgatgatttaaaattcagattatgtggtgcatcag------ataataatattaataatatagcatctggatcat |
247 |
Q |
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| T |
4274822 |
gatgatactaatagaacaacaccctcggatgatttaaaattcagattatgtggtgcatcagataataataataataataataatatatcatctggatccg |
4274921 |
T |
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| Q |
248 |
aaccaacatttcgttgcagtgtctctttggtcacttttgatga |
290 |
Q |
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| T |
4274922 |
aaccaacatttcgttgcagtgtctctttggtcactttggatga |
4274964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 4278062 - 4278221
Alignment:
| Q |
16 |
ggggagaccgttatatattctttcctttgacaacgaactagctaaagattttccaacaatttcattcnnnnnnnnttacaatgattctccaccatggagt |
115 |
Q |
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| T |
4278062 |
ggggaaaccggtctatactctttcctttgatatcaaactagctaaagattttccaacaatttcattcaaaaaaaattacaatgatttttcaccatatact |
4278161 |
T |
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| Q |
116 |
attcaaaataatccagtggttatcc----taatggaccatcagatgatactaatagaaca |
171 |
Q |
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| T |
4278162 |
attcaaaataatccagtggttatccgatgtaatggaccatcagataatactaatagaaca |
4278221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4274534 - 4274588
Alignment:
| Q |
1 |
tcgagtttggtgttaggggagaccgttatatattctttcctttgacaacgaacta |
55 |
Q |
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| T |
4274534 |
tcgattttggtgtccggggagaccgttatatattttttcctttgacaacgaacta |
4274588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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