View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_high_13 (Length: 250)
Name: NF7688_high_13
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 21702444 - 21702206
Alignment:
| Q |
1 |
tttaacagtctcctgattaacctttttcctgatttccaagaccttcttgtgagaatttgagtgcactgatgcttcaaaggttgggctagctgcaggccga |
100 |
Q |
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| T |
21702444 |
tttaacagtctcctgattaacctttttcctgatttccaagaccttcttgtgagaatttgagtgcactgatgcttcaaaggttgggctagctgcaggccga |
21702345 |
T |
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| Q |
101 |
tattcaggaaataggcgaccagacctgtatcgaactccacaagcattgcatagggtcttaggacccttaggcccctctctccattgtggtgtttcagtta |
200 |
Q |
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| T |
21702344 |
tattcaggaaataggcgaccagacctgtatcgaactccacaagcattgcatagggtcttaggacccttaggcccctctctccattgtggtgtttcagtta |
21702245 |
T |
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| Q |
201 |
cctcgcaatgcgtacattttctaggagcaatagattcat |
239 |
Q |
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| T |
21702244 |
cctcgcaatgcgtacattttctaggagcaatagattcat |
21702206 |
T |
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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 210
Target Start/End: Original strand, 40377480 - 40377649
Alignment:
| Q |
41 |
accttcttgtgagaatttgagtgcactgatgcttcaaaggttgggctagctgcaggccgatattcaggaaataggcgaccagacctgtatcgaactccac |
140 |
Q |
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| T |
40377480 |
accttcttgtgactgtttgagtgcacagatgctacaaaagtggggctgtttgccggccggtattcaggatagaggcggccggacctgtaccgaacaccac |
40377579 |
T |
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| Q |
141 |
aagcattgcatagggtcttaggacccttaggcccctctctccattgtggtgtttcagttacctcgcaatg |
210 |
Q |
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| T |
40377580 |
aagcattgcagagcgttttgggaccgttgggtccctctctccattgtggagtctctgtgacctcgcaatg |
40377649 |
T |
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