View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_high_14 (Length: 245)
Name: NF7688_high_14
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11106898 - 11107123
Alignment:
| Q |
1 |
cgttactacattttccctatcgatcataacacgaatgcaatattctcggatcctttaagggcattccttaacatgctagtaatatgtgtgtcgatagcag |
100 |
Q |
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| T |
11106898 |
cgttactacattttccctatcgatcataacacgaatgcaatattctcggatcctttaagggcattccttaacatgctagtaatatgtgtgtcgatagctg |
11106997 |
T |
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| Q |
101 |
tagtttcaagtgcagctgtcctgtggaacaaacaaaatgctaaagaagcaaaacagattcagaacttggaagggtcatcaccaacagtgtcaccaagttc |
200 |
Q |
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| T |
11106998 |
ttgtttcaagtgtagctgtcttgtggaacaaacaaaatgctaaagaagcaaaacagattcagaacttggaagggtcatcaccaacagtctcaccaagttc |
11107097 |
T |
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| Q |
201 |
aatgatttacaatgctgatagagaat |
226 |
Q |
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| T |
11107098 |
aatgatttacaatgctgatagagaat |
11107123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11593124 - 11593349
Alignment:
| Q |
1 |
cgttactacattttccctatcgatcataacacgaatgcaatattctcggatcctttaagggcattccttaacatgctagtaatatgtgtgtcgatagcag |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |
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| T |
11593124 |
cgttactacattttccctatcgatcataacacaaatgcaatattcccggatcctttaagggcattcctaaacatgctagttatatgtgtgtcgatagctg |
11593223 |
T |
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| Q |
101 |
tagtttcaagtgcagctgtcctgtggaacaaacaaaatgctaaagaagcaaaacagattcagaacttggaagggtcatcaccaacagtgtcaccaagttc |
200 |
Q |
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| T |
11593224 |
ttgtttcaagtgtagctgtcttgtggaacaaacaaaatgctaaagaagcaaaacagattcagaacttggaagggtcatcaccaacagtctcaccaagttc |
11593323 |
T |
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| Q |
201 |
aatgatttacaatgctgatagagaat |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11593324 |
aatgatttacaatgctgatagagaat |
11593349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 11120055 - 11120280
Alignment:
| Q |
4 |
tactacattttccctatcgatcataacacgaatgcaatattctcggatcctttaagggcattccttaacatgctagtaatatgtgtgtcgatagcagtag |
103 |
Q |
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|||||||||||||| || ||||||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||| ||| || | |
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| T |
11120055 |
tactacattttcccgattgatcataacacgaataaaatattctcgtatcctttaagggtgttccttaacgtgctagtaatatgtgtgtcggtagttgttg |
11120154 |
T |
|
| Q |
104 |
tttcaagtgcagctgtcctgtggaacaaa---caaaatgctaaagaagcaaaacagattcagaacttggaagggtcatcaccaacagtgtcaccaagttc |
200 |
Q |
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|| | |||| ||| || | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11120155 |
ttgctagtgtagcagttatttggaataaaaaacaaaatgctaaagaagcaaaacagattcagaacttggaagggtcatcaccaacagtgtcaccaagttc |
11120254 |
T |
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| Q |
201 |
aatgatttacaatgctgatagagaat |
226 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
11120255 |
aatgatttacaatgttgatagagaat |
11120280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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