View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7688_high_15 (Length: 236)
Name: NF7688_high_15
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 49163655 - 49163456
Alignment:
| Q |
1 |
ttcatcatttattcatgtatatctttgcttttgttgctttcattccactgcatctctctctcaatgactgtaataatgtaattaaggtcgactcatctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49163655 |
ttcatcatttattcatgtatatctttgcttttgttgttttcattccactgcatctctctctcaatgactgtaataatgtaattaaggtcgactcatctgc |
49163556 |
T |
|
| Q |
101 |
cagccaacctgtattccaggactgcactctagcgacgtatgcattttatttttatttcttactacattgcannnnnnncctcattaatactttaccatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49163555 |
cagccaacctgtattccaggactgcactctagcgacgtatgcattttatttttatttcttactacattgcatttttttcctcattaatactttaccatat |
49163456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University