View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_high_6 (Length: 316)
Name: NF7688_high_6
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 45334932 - 45335210
Alignment:
| Q |
18 |
caaaactcaaactgtgagaatggcagaaaaactataggtgacaaccaataattgaagaca-cattagattatggtaagcagaataatagatatacaaatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45334932 |
caaaactcaaactgtgagaatggcagaaaaactataggtgacaaccaataattgaagacaacattagattatggtaagcagaataatagatatacaaatt |
45335031 |
T |
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| Q |
117 |
gtaatctatagcagatatgacatcagtagccttgcaattactgcataaacattttcacataccacatctcaaccaataannnnnnnnnnnnnnnnnnnnn |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45335032 |
gtaatctatagcagatatgacatcagtagccttgcaattactgcataaacattttcacataccacatctcaaccaataa------------atatatata |
45335119 |
T |
|
| Q |
217 |
atgagcagtttactgaatgcgtgtcacagtgtttcaaatttttaaatcaattttaatattggagttaagattttgtcactttcttctcact |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45335120 |
atgagcagtttactgaatgcgtgtcacagtgtttcaaatttttaaatcaattttaatattggagttaagattttgtcactttcttttcact |
45335210 |
T |
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