View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7688_high_8 (Length: 302)

Name: NF7688_high_8
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7688_high_8
NF7688_high_8
[»] chr8 (4 HSPs)
chr8 (120-184)||(43579970-43580034)
chr8 (124-184)||(24749768-24749828)
chr8 (250-287)||(24749665-24749702)
chr8 (250-287)||(43580100-43580137)
[»] chr6 (2 HSPs)
chr6 (120-184)||(26446793-26446857)
chr6 (250-287)||(26446923-26446960)
[»] chr5 (2 HSPs)
chr5 (120-184)||(21011572-21011636)
chr5 (250-287)||(21011488-21011525)
[»] chr7 (1 HSPs)
chr7 (132-183)||(7338448-7338499)
[»] chr1 (1 HSPs)
chr1 (123-183)||(24501740-24501800)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 43579970 - 43580034
Alignment:
Q  120 tctggaacgacgacgaaaacgaagacaaaatccaggtttctttcatcttcttcctcgcgaaaaag 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43579970 tctggaacgacgacgaaaacgaagacaaaatccaggtttctttcatcttcttcctcgcgaaaaag 43580034  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 24749828 - 24749768
Alignment:
Q  124 gaacgacgacgaaaacgaagacaaaatccaggtttctttcatcttcttcctcgcgaaaaag 184  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  24749828 gaacgacgacgaaaaccaagacaaaatccaggtttctttcatcttcttcctcgtgaaaaag 24749768  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 24749702 - 24749665
Alignment:
Q  250 atgattgtgttaggttttaacgttgaattcatcttctt 287  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24749702 atgattgtgttaggttttaacgttgaattcatcttctt 24749665  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 43580100 - 43580137
Alignment:
Q  250 atgattgtgttaggttttaacgttgaattcatcttctt 287  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  43580100 atgattgtgttggattttaacgttgaattcatcttctt 43580137  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 26446793 - 26446857
Alignment:
Q  120 tctggaacgacgacgaaaacgaagacaaaatccaggtttctttcatcttcttcctcgcgaaaaag 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26446793 tctggaacgacgacgaaaacgaagacaaaatccaggtttctttcatcttcttcctcgcgaaaaag 26446857  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 26446923 - 26446960
Alignment:
Q  250 atgattgtgttaggttttaacgttgaattcatcttctt 287  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26446923 atgattgtgttaggttttaacgttgaattcatcttctt 26446960  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 21011636 - 21011572
Alignment:
Q  120 tctggaacgacgacgaaaacgaagacaaaatccaggtttctttcatcttcttcctcgcgaaaaag 184  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21011636 tctggaacgacgacgaaaacgaaaacaaaatccaggtttctttcatcttcttcctcgcgaaaaag 21011572  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 21011525 - 21011488
Alignment:
Q  250 atgattgtgttaggttttaacgttgaattcatcttctt 287  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  21011525 atgattgtgttgggttttaacgttgaattcatcttctt 21011488  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 7338448 - 7338499
Alignment:
Q  132 acgaaaacgaagacaaaatccaggtttctttcatcttcttcctcgcgaaaaa 183  Q
    |||||||||||||||||||| |||||| |||| |||||||| ||||||||||    
T  7338448 acgaaaacgaagacaaaatctaggtttgtttcctcttcttcttcgcgaaaaa 7338499  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 24501800 - 24501740
Alignment:
Q  123 ggaacgacgacgaaaacgaagacaaaatccaggtttctttcatcttcttcctcgcgaaaaa 183  Q
    |||||||  ||||||| ||||||||||| ||||||| |||  |||||||| ||||||||||    
T  24501800 ggaacgaaaacgaaaaggaagacaaaattcaggtttgtttgctcttcttcttcgcgaaaaa 24501740  T

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