View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_low_1 (Length: 583)
Name: NF7688_low_1
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 13 - 566
Target Start/End: Complemental strand, 220189 - 219636
Alignment:
| Q |
13 |
aatatttttgtttaccatatgaatcaaatctttaacctccttatcacttcactccctaactcattcactatcataattgacgatttggaacatcgtcaat |
112 |
Q |
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| T |
220189 |
aatatttttgtttaccatatgaatcaaatctttaacctccttatcacttcactctctaactcattcactatcataattgacgatttggaacatcgtcaat |
220090 |
T |
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| Q |
113 |
ttttataattctacaaccataattgagattatataaaccacgattaattgcaattctttgcgaatgcgactatatccgcgattgtgattaattgtgttta |
212 |
Q |
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| T |
220089 |
ttttataattctacaaccataattgagattatataaaccacgattaattgcaattcttcgcgaatgcgactatatctgcgattgtgattaattgtgttta |
219990 |
T |
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| Q |
213 |
taatttgttacctcgagaaatttggctccagcttcaagctcccgctctttggaagaacagttcccacggccggtagtgtataggttttttgcaactgaaa |
312 |
Q |
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| T |
219989 |
taatttgttacctcgagaaatttggctccagcttcaagctcccactctttggaagaacatttcccacgaccggtagtgtatagtttttttgcaactgaaa |
219890 |
T |
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| Q |
313 |
aggtacgcattataatcctccttttgttcttgatttccttgtttagtttcataggttttggcattgatgttaaagtattcaaccttttctgataagcaat |
412 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||| |
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| T |
219889 |
agctacgcattataatcctccttttgttcttgatttccttgtttagtttcatacgttttggcactgatgttaaagtattcagccttttctgaaaagcaat |
219790 |
T |
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| Q |
413 |
cactgccttcacaaactcctacacatttaatattccttaaaatcaaatttcatctcaataagatccaatgtaattgcttatcagaaaattggaaagtcta |
512 |
Q |
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| T |
219789 |
cactgccttcacaaactcctacacatttaatattcctcaaaatcaaatttcatctcaataagatccaatgtaattgcttatcagaaaattggaaagtcta |
219690 |
T |
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| Q |
513 |
gattttaacattgaaatttgagctgtctaatctcgatccaatgactgcctgcct |
566 |
Q |
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| T |
219689 |
gattttaacattgaaatttgagctgtctaatctcgatccaatgactgcctgcct |
219636 |
T |
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