View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_low_10 (Length: 372)
Name: NF7688_low_10
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 29103637 - 29103993
Alignment:
| Q |
1 |
tgattccgataagctttctcgaattccagtttgaatttcataaacaccttgctcgccttcgccactgtcattgccgccgttggattttccggcaatgacg |
100 |
Q |
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| T |
29103637 |
tgattccgataagctttctcgaattccagtttgattttcataaacaccttgctcgccttcgccactgtcattgccgccgttggattttccggcaatgacg |
29103736 |
T |
|
| Q |
101 |
aaaacacttctccccacgctactctctcgtacttctctatcaactttttcaccttctccatctgattcaacaaccaatcgtcgccgagaacgtattgcaa |
200 |
Q |
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| T |
29103737 |
aaaacacttctccccacgctactctctcgtacttctctatcaactttttcaccttctccatgtgattcaacaaccaatcgtcgccgagaacgtattgcaa |
29103836 |
T |
|
| Q |
201 |
gttcgattgacgcaccttctccaccacgtgccggagattgtttgcgagaaatagatatgataacgatacattcttgcattgtttcgatttgctatcaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29103837 |
gttcgattgacgcaccttctccaccacgtgccggagattgtttgcgagaaatagatatgataacgatacattcttgcattgtttcgatttgctatcaatt |
29103936 |
T |
|
| Q |
301 |
ttacaaagaagaaccagaatcagccacgctattcgaacggaaaatccagtctccatt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29103937 |
ttacaaagaagaaccagaatcagccacgctattcgaacggaaaatccagtctccatt |
29103993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 29089383 - 29089725
Alignment:
| Q |
8 |
gataagctttctcgaattccagtttgaatttcataaacaccttgctcgccttcgccactgtcattgccgccgttggattttccggcaatgacgaaaacac |
107 |
Q |
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||||||||||||| |||||||| |||||||||||||| ||| ||||||| |||||||| || || | ||||||||||| ||||||||||| || ||| |
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| T |
29089383 |
gataagctttctcaaattccagattgaatttcataaataccgccctcgcctccgccactgatatcgctgtcgttggatttttcggcaatgacgtaaccac |
29089482 |
T |
|
| Q |
108 |
ttctccccacgctactctctcgtacttctctatcaactttttcaccttctccatctgattcaacaaccaatcgtcgccgagaacgtattgcaagttcgat |
207 |
Q |
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| | ||||| |||| |||||| |||||||| |||||| ||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| |
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| T |
29089483 |
tgcgccccatgctattctctcatacttctcaatcaaccgtttcaccttctccatgtgcttcaacaaccaatcgtcaccaagaacgtattgcaagttcgac |
29089582 |
T |
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| Q |
208 |
tgacgcaccttctccaccacgtgccggagattgtttgcgagaaatagatatgataacgatacattcttgcattgtttcgatttgctatcaattttacaaa |
307 |
Q |
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||| ||||||||||||||||| | ||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||| || ||||| || | |
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| T |
29089583 |
acacgaaccttctccaccacgtgttgaagattgtttgcaagaaatagatatgataaggatatgttcttgcattgcttcgatttgacgtcgattttgcaga |
29089682 |
T |
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| Q |
308 |
gaagaaccagaatcagccacgctattcgaacggaaaatccagt |
350 |
Q |
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||||||| ||||||| |||||||||||||| ||||||| |||| |
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| T |
29089683 |
gaagaactagaatcaaccacgctattcgaatggaaaattcagt |
29089725 |
T |
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