View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7688_low_11 (Length: 360)

Name: NF7688_low_11
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7688_low_11
NF7688_low_11
[»] chr3 (14 HSPs)
chr3 (28-344)||(5454577-5454900)
chr3 (28-254)||(5445995-5446227)
chr3 (28-158)||(5828444-5828574)
chr3 (28-240)||(5502597-5502815)
chr3 (28-158)||(5489772-5489902)
chr3 (28-157)||(5854433-5854562)
chr3 (28-157)||(5849238-5849367)
chr3 (28-157)||(20343230-20343359)
chr3 (28-158)||(5802842-5802972)
chr3 (41-158)||(5484371-5484488)
chr3 (28-158)||(5525415-5525533)
chr3 (289-329)||(5490022-5490062)
chr3 (289-344)||(5446286-5446341)
chr3 (193-254)||(5489928-5489989)
[»] chr6 (2 HSPs)
chr6 (28-254)||(25809585-25809817)
chr6 (289-344)||(25809471-25809526)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 28 - 344
Target Start/End: Original strand, 5454577 - 5454900
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5454577 ccaatcttctttttatatgctgatgtgaccaatacaagaactattagtcctatagtgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 5454676  T
Q  128 gcttattctttttatgatctgagggttgaagctta-------ctaaaaagaaggtatagaagcttactaaaaagaagagaaatgcatctatagagaacac 220  Q
    ||||||||||||||||||||||||||||||| | |       | || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454677 gcttattctttttatgatctgagggttgaagttaatgtcagtcaaacaagaaggtatagaagcttactaaaaagaagagaaatgcatctatagagaacac 5454776  T
Q  221 aacttccatctggaagttgattcatgatcatttgttcttagaaatagcccaggtacatacttacttgcgaaaagagaatttactagtgtgacgtaatttc 320  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5454777 aacttccatctggaagttgatttatgatcatttgttcttagaaatagcccaggtacatacttacttgtgaaaagagaatttactagtgtgacgtaatttc 5454876  T
Q  321 aagttttcagcaatgcttaataat 344  Q
    ||||||||||||||||||||||||    
T  5454877 aagttttcagcaatgcttaataat 5454900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 5445995 - 5446227
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||| ||||||| ||||  ||||||||||||| ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  5445995 ccaagcttctttctatacactgatgtgaccaatacaagaacgtttagtcctataatgaatgcaacaactcctgcaagagtcccagcaagcttcaatttct 5446094  T
Q  128 gcttattctttttatgatctgagggttgaagcttact-------aaaaagaaggtatagaagcttactaaaaagaagagaaatgcatctatagagaacac 220  Q
    ||||||||||||||||||||||||||||||| ||| |       || |||  ||||||||||||||||||| |||||| |||  ||||||| ||||||||    
T  5446095 gcttattctttttatgatctgagggttgaag-ttaatgtcagtcaacaagctggtatagaagcttactaaagagaagaaaaaaacatctatggagaacac 5446193  T
Q  221 aacttccatctggaagttgattcatgatcatttg 254  Q
    | ||||||| ||| ||||||||||||||||||||    
T  5446194 agcttccatttgggagttgattcatgatcatttg 5446227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 5828574 - 5828444
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||| ||||||| |||||||||||||| |||| || ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5828574 ccaagcttctttctatatgctgatgtggccaataccagaacgattagtccaataatgaatgcaataactcctgcaagagtcccaacaagcttcaacttct 5828475  T
Q  128 gcttattctttttatgatctgagggttgaag 158  Q
      |||||||||||||||||||||||||||||    
T  5828474 cgttattctttttatgatctgagggttgaag 5828444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 5502597 - 5502815
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||| ||||||| ||||| ||||||||| ||| || |||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||     
T  5502597 ccaagcttctttctatatactgatgtgatcaatacgagaacggttagtcctataatgaatgcaacaactcctgcaagagtcccagcaagcttcaatttcc 5502696  T
Q  128 gcttattctttttatgatctgagggttgaagcttact-------aaaaagaaggtatagaagcttactaaaaagaagagaaatgcatctatagagaacac 220  Q
    ||||||||||||||||||||||||||||||  ||| |       || |||||||||||| ||  ||||||| |||||| |||  |||| ||||||||||     
T  5502697 gcttattctttttatgatctgagggttgaa-attaatgtcagtcaacaagaaggtataggagtatactaaagagaagaaaaaaacatcgatagagaacaa 5502795  T
Q  221 aacttccatctggaagttga 240  Q
    ||||||||| ||||||||||    
T  5502796 aacttccatttggaagttga 5502815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 5489772 - 5489902
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||| ||||||| |||||| |||||||| |||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||     
T  5489772 ccaagcttctttctatatgttgatgtgatcaaaacgagaacgcttagtactataatgaatgcaataactcctgcaagagtcccagcaagcttcaatttcc 5489871  T
Q  128 gcttattctttttatgatctgagggttgaag 158  Q
    ||||||||| |||||||||||||||||||||    
T  5489872 gcttattctctttatgatctgagggttgaag 5489902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 5854562 - 5854433
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||| |||||||||| ||||||| |||     
T  5854562 ccaagcttctttttatatgctgatgtgaccaatacaagaacgattagtcctataataaatgtaataactcctgcaacagtcccagcatgcttcaagttcc 5854463  T
Q  128 gcttattctttttatgatctgagggttgaa 157  Q
     ||||||||||||||||||||||| |||||    
T  5854462 tcttattctttttatgatctgaggattgaa 5854433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 5849367 - 5849238
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    ||||| |||| | ||||||||||||| ||||| ||||||||  |||||||||| ||||| ||||| |||||||||| ||||| |||| ||||||| ||      
T  5849367 ccaattttctctctatatgctgatgtaaccaatacaagaacggttagtcctattatgaacgcaatgactcctgcaacagtccaagcacgcttcaagtttc 5849268  T
Q  128 gcttattctttttatgatctgagggttgaa 157  Q
    ||||||||||||||||||||||||||||||    
T  5849267 gcttattctttttatgatctgagggttgaa 5849238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 20343230 - 20343359
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||| ||||||| |||||||||| |||||||| || |||||   |||||||||||| ||||||||||| || |||| | |||||| ||||||||| |||     
T  20343230 ccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataaatgcaataaccccggcaaaaatcccagaaagcttcaagttcc 20343329  T
Q  128 gcttattctttttatgatctgagggttgaa 157  Q
     |||||||||||||||||||||||||||||    
T  20343330 tcttattctttttatgatctgagggttgaa 20343359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 5802972 - 5802842
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||| ||||||| || |||||||||||||||||||||||||  ||| |   |||| ||||||   ||||||||||||||||||  || ||||||| |||     
T  5802972 ccaagcttctttctagatgctgatgtgaccaaaacaagaacggttaatagcataacgaatgccgaaactcctgcaagagtcccgacacgcttcaaattcc 5802873  T
Q  128 gcttattctttttatgatctgagggttgaag 158  Q
     ||||||||||||||||||||| ||||||||    
T  5802872 tcttattctttttatgatctgaaggttgaag 5802842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 5484371 - 5484488
Alignment:
Q  41 tatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttctgcttattcttttt 140  Q
    ||||||||||| ||||||  ||||||||   ||||||||| |||||||||||||||||||||| ||||| | || ||||||| ||   | |||||||| |    
T  5484371 tatatgctgatatgaccattacaagaacggatagtcctattatgaatgcaataactcctgcaacagtccgaacacgcttcaagtttctcgtattctttat 5484470  T
Q  141 atgatctgagggttgaag 158  Q
    ||||||||  ||||||||    
T  5484471 atgatctgtaggttgaag 5484488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 5525415 - 5525533
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||| ||||||| ||||| ||||||||||||| | |||||| ||||||||||||||            |||||| | |||||||||||||||| | |||     
T  5525415 ccaagcttctttctatatactgatgtgaccaatataagaacaattagtcctataat------------tcctgcgacagtcccagcaagcttcgagttcc 5525502  T
Q  128 gcttattctttttatgatctgagggttgaag 158  Q
     ||||||||||||||||||||| ||||||||    
T  5525503 tcttattctttttatgatctgatggttgaag 5525533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 5490022 - 5490062
Alignment:
Q  289 gaaaagagaatttactagtgtgacgtaatttcaagttttca 329  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  5490022 gaaaagagaatttactagtgtcacgtaatttcaagttttca 5490062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 5446286 - 5446341
Alignment:
Q  289 gaaaagagaatttactagtgtgacgtaatttcaagttttcagcaatgcttaataat 344  Q
    |||||||||||||| |||||| |||||||||||||||||||   ||||||||||||    
T  5446286 gaaaagagaatttaatagtgtcacgtaatttcaagttttcaaggatgcttaataat 5446341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 5489928 - 5489989
Alignment:
Q  193 agaagagaaatgcatctatagagaacacaacttccatctggaagttgattcatgatcatttg 254  Q
    |||||| ||| |||||| |||||| |||||||||||| ||| |||| |||||||||||||||    
T  5489928 agaagaaaaaagcatctttagagagcacaacttccatttgggagtttattcatgatcatttg 5489989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 25809817 - 25809585
Alignment:
Q  28 ccaatcttctttttatatgctgatgtgaccaaaacaagaactattagtcctataatgaatgcaataactcctgcaagagtcccagcaagcttcaacttct 127  Q
    |||| ||||||| ||||  ||||||||||||| ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  25809817 ccaagcttctttctatacactgatgtgaccaatacaagaacgtttagtcctataatgaatgcaacaactcctgcaagagtcccagcaagcttcaatttct 25809718  T
Q  128 gcttattctttttatgatctgagggttgaagcttact-------aaaaagaaggtatagaagcttactaaaaagaagagaaatgcatctatagagaacac 220  Q
    ||||||||||||||||||||||||||||||| ||| |       || |||  ||||||||||||||||||| |||||| |||  ||||||| ||||||||    
T  25809717 gcttattctttttatgatctgagggttgaag-ttaatgtcagtcaacaagctggtatagaagcttactaaagagaagaaaaaaacatctatggagaacac 25809619  T
Q  221 aacttccatctggaagttgattcatgatcatttg 254  Q
    | ||||||| ||| ||||||||||||||||||||    
T  25809618 agcttccatttgggagttgattcatgatcatttg 25809585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 25809526 - 25809471
Alignment:
Q  289 gaaaagagaatttactagtgtgacgtaatttcaagttttcagcaatgcttaataat 344  Q
    |||||||||||||| |||||| |||||||||||||||||||   ||||||||||||    
T  25809526 gaaaagagaatttaatagtgtcacgtaatttcaagttttcaaggatgcttaataat 25809471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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