View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_low_19 (Length: 287)
Name: NF7688_low_19
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 36169308 - 36169205
Alignment:
| Q |
163 |
aaagactcgtacagtgttcattaccccatgttgtatgtccttcaaacttgccaaatgctactaccaataaaaaaccttccaatttctttcctacacgacg |
262 |
Q |
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| T |
36169308 |
aaagactcgtacagtgttcattaccccatgt---atgtccttcaaacttgccaaatgctactaccaataaaaaaccttccaatttctttcctacacgacg |
36169212 |
T |
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| Q |
263 |
ctcttta |
269 |
Q |
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||||||| |
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| T |
36169211 |
ctcttta |
36169205 |
T |
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Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 36169454 - 36169365
Alignment:
| Q |
17 |
aagaatattaacgttgttttgttttaatttggattttgtgatggaatgagagtgacttttctcctataattctggccagcaaaatccttg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36169454 |
aagaatattaacgttgttttgttttaatttggattttgtgatggaatgagagtgacttttctcctataattctggccagcaaaatccttg |
36169365 |
T |
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