View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_low_2 (Length: 525)
Name: NF7688_low_2
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 25 - 362
Target Start/End: Original strand, 21400236 - 21400576
Alignment:
| Q |
25 |
attgtcagtgtc-gacacccgacactccaatccaagatctaatctgctgccaaattgataaaaatgatcatatagtgtggattaaaataaaaactttaca |
123 |
Q |
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| T |
21400236 |
attgtcagcgtctgacacccgacactccaatccaagatctaatctgctgccaaattgataaaaatgatcatatattgtggattaaaataaaaactttaca |
21400335 |
T |
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| Q |
124 |
aacttattataaaatgaaaagattttccactctattgtggtttaagatataatcacaatagtgtgacctaaaataaacttttcaaagtagtgatctaatt |
223 |
Q |
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| T |
21400336 |
aacttattattaaatgaaaagattttccactctattgtggtttaagatataatcacaatagtgtgacctaatataaacttttcaaagtagtgatctaatt |
21400435 |
T |
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| Q |
224 |
t-aaaaaaccaataagttactaagtggcgtcttttattttagtgttgttagaaattaatcaattgaaa-taaatgatgaaattttaagaggacgtgacaa |
321 |
Q |
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| T |
21400436 |
taaaaaaaccaataagttacaaagtgacgtcttttattttagtgttgttagaaattaatcaattgaaattaaatgatgaaattttaagaggacgtgacaa |
21400535 |
T |
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| Q |
322 |
cattgcatttgttgattgacatttgggaaaattgtattatg |
362 |
Q |
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| T |
21400536 |
cattgcatttgttgattaatatttgggaaaattgttttatg |
21400576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 384 - 517
Target Start/End: Original strand, 21400575 - 21400709
Alignment:
| Q |
384 |
tgagccgtctatctccggcatacaattgtaaagattaatcttttaaattggataagattataataaatgat-aaaactcttcctcaaaatatttaaatca |
482 |
Q |
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| T |
21400575 |
tgagccgtctatcccctgcatacaactgcaaagattaatctcttaaatcggataagattataataaatgataaaaactcttcctcaaaatatttaaataa |
21400674 |
T |
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| Q |
483 |
attgtattgtaagtgtcatctttacgtatattctt |
517 |
Q |
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| T |
21400675 |
attatattgaaagtgtcatctttacgtatattctt |
21400709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 21396051 - 21396087
Alignment:
| Q |
132 |
ataaaatgaaaagattttccactctattgtggtttaa |
168 |
Q |
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| T |
21396051 |
ataaaattaaaagattttccactctattgtgctttaa |
21396087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 40563844 - 40563792
Alignment:
| Q |
25 |
attgtcagtgtcgacacccgacactccaatccaagatctaatctgctgccaaa |
77 |
Q |
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| T |
40563844 |
attgtcagtgtcgacacccaacactccaatccacaatataatctgctgccaaa |
40563792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 7260933 - 7260985
Alignment:
| Q |
410 |
tgtaaagattaatcttttaaattggataagattataataaatgataaaactct |
462 |
Q |
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| T |
7260933 |
tgtagagactaatcttataagttggataagattacaacaaatgataaaactct |
7260985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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