View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_low_21 (Length: 266)
Name: NF7688_low_21
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_low_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 84 - 266
Target Start/End: Original strand, 10011437 - 10011609
Alignment:
| Q |
84 |
ggtgttcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaaggttgatgaaagattctggcggagaacatgcagctatggagatggcatt |
183 |
Q |
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| T |
10011437 |
ggtgatcattgaatcgatccaaaacatgtcgtaaatttcgttgttg----------atgaaagattctggcggagaacatgcagctatggagatggcatt |
10011526 |
T |
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| Q |
184 |
gaagagttggatggatactgtgttgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctag |
266 |
Q |
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| T |
10011527 |
gaagagttggatggatactgtgctgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctag |
10011609 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 10011331 - 10011409
Alignment:
| Q |
14 |
tggacatcaaattcatatcagtnnnnnnntagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat |
92 |
Q |
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| T |
10011331 |
tggacatcaaattcatatcagtaaaaaaatagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat |
10011409 |
T |
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