View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7688_low_25 (Length: 235)
Name: NF7688_low_25
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 24201993 - 24202193
Alignment:
| Q |
20 |
aacttttttcttgtgtggacaaatcagaggttgaagtgaaatatgagttaatttgtgcaagttgttttgttttcacaaatacaacaatgctttttctggg |
119 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
24201993 |
aacttttttcttgtgtggacaaatgaaaggttgtagtgaaatatgagttaatttgtgcaagttgttttcttttcacaaatacaacaatgttttttctgcg |
24202092 |
T |
|
| Q |
120 |
ttcatttgaaacttgtatatcgtttattttctaccaaactatgcaacttgggattttccatttcaagagattgattcatcaattgtagattctaaatgat |
219 |
Q |
| |
|
|| ||| ||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| || |
|
|
| T |
24202093 |
ttaattcgaaacttttatatagtttattttctatc-aactatgcaacttggaattttccatttcaagagattaattcatcaattttagattctaaattat |
24202191 |
T |
|
| Q |
220 |
gt |
221 |
Q |
| |
|
|| |
|
|
| T |
24202192 |
gt |
24202193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 24224106 - 24224225
Alignment:
| Q |
30 |
ttgtgtggacaaatcagaggttgaagtgaaatatgagttaatttgtgcaagttgttttgttttcacaaatacaacaatgctttttctgggttcatttgaa |
129 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| | ||| |||| || |
|
|
| T |
24224106 |
ttgtgtggacaaatcaaaggttgtagtgaaatatgagttaatttttgcaagttgtttgcttttcacaaatacaacaatgttttagtagagttaatttaaa |
24224205 |
T |
|
| Q |
130 |
acttgtatatcgtttatttt |
149 |
Q |
| |
|
|||||||||| || |||||| |
|
|
| T |
24224206 |
acttgtatattgtgtatttt |
24224225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University