View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7688_low_3 (Length: 517)

Name: NF7688_low_3
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7688_low_3
NF7688_low_3
[»] chr6 (4 HSPs)
chr6 (11-301)||(10150404-10150678)
chr6 (315-500)||(10150141-10150327)
chr6 (265-307)||(14340946-14340988)
chr6 (267-301)||(32408833-32408867)
[»] chr7 (3 HSPs)
chr7 (34-169)||(33196454-33196589)
chr7 (265-307)||(753347-753389)
chr7 (256-299)||(28844362-28844405)
[»] chr5 (4 HSPs)
chr5 (251-306)||(38149385-38149440)
chr5 (269-307)||(17777705-17777743)
chr5 (266-307)||(913010-913051)
chr5 (263-307)||(10296313-10296357)
[»] chr3 (5 HSPs)
chr3 (265-307)||(20143824-20143866)
chr3 (265-307)||(23269323-23269365)
chr3 (265-308)||(2621059-2621102)
chr3 (249-307)||(3776773-3776831)
chr3 (265-305)||(24235813-24235853)
[»] chr1 (5 HSPs)
chr1 (258-307)||(30237889-30237938)
chr1 (266-307)||(52013783-52013824)
chr1 (260-307)||(32927077-32927124)
chr1 (265-303)||(12519117-12519155)
chr1 (267-303)||(600951-600987)
[»] scaffold0091 (1 HSPs)
scaffold0091 (265-307)||(5904-5946)
[»] chr8 (5 HSPs)
chr8 (265-307)||(5226487-5226529)
chr8 (269-306)||(29972965-29973002)
chr8 (267-307)||(6950223-6950263)
chr8 (267-307)||(34563137-34563177)
chr8 (265-297)||(44865718-44865750)
[»] chr4 (5 HSPs)
chr4 (265-299)||(8422988-8423022)
chr4 (267-307)||(29563539-29563579)
chr4 (67-143)||(38823227-38823303)
chr4 (67-143)||(41209685-41209761)
chr4 (265-301)||(54986307-54986343)
[»] chr2 (2 HSPs)
chr2 (265-299)||(9477864-9477898)
chr2 (267-307)||(2400043-2400083)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 10150678 - 10150404
Alignment:
Q  11 aagaatataaatttgaaaagtcaagaatataaataacctcaggatggtatctgatccctcctttcataggacctctagagttatcatgttgaatcctgaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  10150678 aagaatataaatttgaaaagtcaagaatataaataacctcaggatggtatctgatccctcctttcatagggcctctagagttatcatgttgaattctgaa 10150579  T
Q  111 tccaacataagtagccaaggttccatcatctttagggatgctacactcaacctgaatttgcattaaacaatatttagaacatgatgagttatcaaactat 210  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||          ||| |   ||||||||||||||||     
T  10150578 tccaacatatgtagccaaggttccatcatctttagggatgctacactccacctgaattttcatta----------agacc---atgagttatcaaactac 10150492  T
Q  211 atgattcaaatcttataaagacatatttaccatacaataaaatatggtcgtgtctggataaacaacttaattaaatgtttatagcataaac 301  Q
    ||||||||||||||   |||| ||||||||| ||||||||||||||| ||||||  ||||||||||||||| |||||  |||| |||||||    
T  10150491 atgattcaaatctt---aagatatatttaccgtacaataaaatatggccgtgtccagataaacaacttaatcaaatgcatataacataaac 10150404  T

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Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 315 - 500
Target Start/End: Complemental strand, 10150327 - 10150141
Alignment:
Q  315 tcagttataagatgttttcataagctgcttcggaaaacatacgaaaa-gtaaaccagaaacagtttataaacatgttataagtgtatatgaaaatatgat 413  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || |||||| | |||||||||||| ||||||||||||||| |||||||  |||||    
T  10150327 tcagttataagatgttttcataagctgcttcgaaaaacatacgagaacgtaaactaaaaacagtttatagacatgttataagtgtttatgaaataatgat 10150228  T
Q  414 tagcaaaaccaaaagatcatgaaaacaagatatttgtgtgatttcacttaccttaatttctctgaatggaatcaacaaacttttctc 500  Q
    || |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10150227 taacaaaacaaagtgatcatgaaaacaagatatttgtgtgatttcacttaccttaatttctctgaatggaatcaacaaacttttctc 10150141  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 14340988 - 14340946
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||||||||||||||| || ||||| |||||||||||||    
T  14340988 tggataaacaacttaattaagtgcttataacataaacacttat 14340946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 32408833 - 32408867
Alignment:
Q  267 gataaacaacttaattaaatgtttatagcataaac 301  Q
    |||||||||||||||||| ||||||||||||||||    
T  32408833 gataaacaacttaattaagtgtttatagcataaac 32408867  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 33196589 - 33196454
Alignment:
Q  34 agaatataaataacctcaggatggtatctgatccctcctttcataggacctctagagttatcatgttgaatcctgaatccaacataagtagccaaggttc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||  |||||||||| |||||    ||| || |    
T  33196589 agaatataaataacctcaggatggtatctgatccctcctttcatagggcctctagcattatcatgttgaactctgaatccaatataagattgcaacgtgc 33196490  T
Q  134 catcatctttagggatgctacactcaacctgaattt 169  Q
    | ||||||||||| ||| |||| |||||||||||||    
T  33196489 cgtcatctttaggaatggtacattcaacctgaattt 33196454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 753389 - 753347
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  753389 tggataaacaacttaattaagtgtttatagcataaacatttat 753347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 28844362 - 28844405
Alignment:
Q  256 ggtcgtgtctggataaacaacttaattaaatgtttatagcataa 299  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||    
T  28844362 ggtcctgtctggatatacaacttaattaagtgtttatagcataa 28844405  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 38149440 - 38149385
Alignment:
Q  251 aatatggtcgtgtctggataaacaacttaattaaatgtttatagcataaacactta 306  Q
    ||||||| | ||| ||||||||||||||||||||||  ||||||||||||||||||    
T  38149440 aatatggccctgtttggataaacaacttaattaaatagttatagcataaacactta 38149385  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 17777705 - 17777743
Alignment:
Q  269 taaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  17777705 taaacaacttaattaagtgtttatagcatacacacttat 17777743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 913051 - 913010
Alignment:
Q  266 ggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||||||||||||||||| |||||  ||||||||||||    
T  913051 ggataaacaacttaattaaatgcttatactataaacacttat 913010  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 10296313 - 10296357
Alignment:
Q  263 tctggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||||||||| ||||||| || ||||||||||||| |||||    
T  10296313 tctggataaacaacataattaagtgcttatagcataaacccttat 10296357  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 20143824 - 20143866
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  20143824 tggataaacaacttaactaaaggtttatagcataaacacttat 20143866  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 23269365 - 23269323
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  23269365 tggataaacaacttaactaaaggtttatagcataaacacttat 23269323  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 2621102 - 2621059
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaacacttata 308  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||    
T  2621102 tggataaacaacttaatgaaatgcttattgcataaacacttata 2621059  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 3776831 - 3776773
Alignment:
Q  249 aaaatatggtcgtgtctggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||| |||| ||| |||||||||||||||||| | || |||||| ||||||||||||    
T  3776831 aaaatagggtcctgtttggataaacaacttaatttactgcttatagtataaacacttat 3776773  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 24235853 - 24235813
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaacactt 305  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  24235853 tggataaacaacttaattaagtgtttataacataagcactt 24235813  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 30237938 - 30237889
Alignment:
Q  258 tcgtgtctggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||| |||||||||||||||||||| ||| |||||||||| |||||||    
T  30237938 tcgtgtttggataaacaacttaattaagtgtctatagcataagcacttat 30237889  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 52013783 - 52013824
Alignment:
Q  266 ggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  52013783 ggataaacaacttaattaaacgtttatagcataaatacttat 52013824  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 32927077 - 32927124
Alignment:
Q  260 gtgtctggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||| |||||||||||||||||||||||||||| | ||||| ||||||    
T  32927077 gtgtatggataaacaacttaattaaatgtttatggtataaatacttat 32927124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 12519155 - 12519117
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaacac 303  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  12519155 tggataaacaacttaactaagtgtttatagcataaacac 12519117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 600951 - 600987
Alignment:
Q  267 gataaacaacttaattaaatgtttatagcataaacac 303  Q
    ||||||||||||||||||| | |||||||||||||||    
T  600951 gataaacaacttaattaaaagattatagcataaacac 600987  T

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Target: scaffold0091 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 5904 - 5946
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    ||||||||||||||||| || ||||||||||||||||| ||||    
T  5904 tggataaacaacttaatcaactgtttatagcataaacatttat 5946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 5226487 - 5226529
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    ||||||||||||||||| || ||||||||||||||||| ||||    
T  5226487 tggataaacaacttaatcaactgtttatagcataaacatttat 5226529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 29972965 - 29973002
Alignment:
Q  269 taaacaacttaattaaatgtttatagcataaacactta 306  Q
    |||||||||||||| | |||||||||||||||||||||    
T  29972965 taaacaacttaattgagtgtttatagcataaacactta 29973002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 6950223 - 6950263
Alignment:
Q  267 gataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||||||||||||| || ||||||||||||| |||||    
T  6950223 gataaacaacttaattaagtgcttatagcataaacgcttat 6950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 34563137 - 34563177
Alignment:
Q  267 gataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    ||||||||||||||||||| | |||||||||||||| ||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttat 34563177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 44865750 - 44865718
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcat 297  Q
    ||||||||||||||||||||||| |||||||||    
T  44865750 tggataaacaacttaattaaatgcttatagcat 44865718  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 299
Target Start/End: Complemental strand, 8423022 - 8422988
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataa 299  Q
    |||||||||||||||||||| ||||||||||||||    
T  8423022 tggataaacaacttaattaagtgtttatagcataa 8422988  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 29563579 - 29563539
Alignment:
Q  267 gataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    ||||||||||||||||||| | ||||||||||| |||||||    
T  29563579 gataaacaacttaattaaacgcttatagcataaccacttat 29563539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 38823303 - 38823227
Alignment:
Q  67 cctcctttcataggacctctagagttatcatgttgaatcctgaatccaacataagtagccaaggttccatcatcttt 143  Q
    ||||||||||| ||||| | ||  || |||||||| ||||| || |||||||||| | |||| ||||||||||||||    
T  38823303 cctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatcttt 38823227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 41209761 - 41209685
Alignment:
Q  67 cctcctttcataggacctctagagttatcatgttgaatcctgaatccaacataagtagccaaggttccatcatcttt 143  Q
    ||||||||||| ||||| | ||  || |||||||| ||||| || |||||||||| | |||| ||||||||||||||    
T  41209761 cctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatcttt 41209685  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 54986307 - 54986343
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataaac 301  Q
    |||||||||||||||| |||| |||||||||||||||    
T  54986307 tggataaacaacttaaataaaagtttatagcataaac 54986343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 299
Target Start/End: Original strand, 9477864 - 9477898
Alignment:
Q  265 tggataaacaacttaattaaatgtttatagcataa 299  Q
    |||||||||||||||||||| ||||||||||||||    
T  9477864 tggataaacaacttaattaagtgtttatagcataa 9477898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 2400043 - 2400083
Alignment:
Q  267 gataaacaacttaattaaatgtttatagcataaacacttat 307  Q
    |||||||| ||||||||||||||||| ||||||||| ||||    
T  2400043 gataaacaccttaattaaatgtttatggcataaacaattat 2400083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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