View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7688_low_4 (Length: 511)

Name: NF7688_low_4
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7688_low_4
NF7688_low_4
[»] chr1 (7 HSPs)
chr1 (18-498)||(10009449-10009929)
chr1 (23-178)||(47249017-47249172)
chr1 (134-254)||(47249173-47249293)
chr1 (134-306)||(41324990-41325161)
chr1 (323-388)||(41324895-41324960)
chr1 (445-498)||(47249499-47249552)
chr1 (323-388)||(47249370-47249435)
[»] chr6 (4 HSPs)
chr6 (23-178)||(20905803-20905958)
chr6 (134-254)||(20905682-20905802)
chr6 (445-498)||(20905415-20905469)
chr6 (339-388)||(20905539-20905588)
[»] chr8 (3 HSPs)
chr8 (66-178)||(42310195-42310307)
chr8 (152-254)||(42310074-42310176)
chr8 (445-498)||(42309348-42309402)


Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 10009929 - 10009449
Alignment:
Q  18 agaagggtctcttgatgacgcatagaagattatgcataagcttgctcttgctgcataatcttttatgtaaacagtattgcatgttttatgaaacaattac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10009929 agaagggtctcttgatgacgcatagaagattatgcataagcttgctcctgctgcataatcttttatgtaaacagtattgcatgttttatgaaacaattac 10009830  T
Q  118 tgttattactactaatttatggtagacaaatatcacaatgacttttattaatttcgctttaatttgtttctcacaattctacaatatagagtagtctttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10009829 tgttattactactaatttatggtagacaaatatcacaatgacttttattaatttcgctttaatttgtttctcacaattctacaatatagagtagtctttg 10009730  T
Q  218 gattgtttggagactaaacatgttgaataaatgagaagcaagcacagttgatttattttcttttcaatcctagaaaaatcaatgaggaatgtatttcttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10009729 gattgtttggagactaaacatgttgaataaatgagaagcaagcacagttgatttattttcttttcaatcctagaaaaatcaatgaggaatgtatttcttt 10009630  T
Q  318 ctagaagaacaagttgtaaaagaatttgtaataacatttaccataaaaaattgttaatgaatatctataaagatttacaataacttaatgtattcaaaaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10009629 ctagaagaacaagttgtaaaagaatttgtaataacatttaccataaaaaattgttaatgaatatctataaagatttacaataacttaatgtattcaaaaa 10009530  T
Q  418 atttatattttctcattcaaatgtaagtacttcaacgtttgggattcttaatggaaatttttgtgaaattcctaatggtct 498  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10009529 atttatattttctcattcaaatgtaagtccttcaacgtttggaattcttaatggaaatttttgtgaaattcctaatggtct 10009449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 47249017 - 47249172
Alignment:
Q  23 ggtctcttgatgacgcatagaagattatgcataagcttgctcttgctgcataatcttttatgtaaacagtattgcatgttttatgaaacaattactgtta 122  Q
    ||||||||||||| |||| |||   |||||| || | | ||| | |||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||    
T  47249017 ggtctcttgatgaggcatcgaaagatatgcagaatcctcctcctactgcataatcttttatataaatagtgttgcatgttttatgaaacaattagtgtta 47249116  T
Q  123 ttactactaatttatggtagacaaatatcacaatgacttttattaatttcgcttta 178  Q
    |||||  ||||||||||||||||| |||||||||||||||||| |||||| |||||    
T  47249117 ttactgataatttatggtagacaagtatcacaatgacttttatcaatttcacttta 47249172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 47249173 - 47249293
Alignment:
Q  134 ttatggtagacaaatatcacaatgacttttattaatttcgctttaatttgtttctcacaattctacaatatagagtagtctttggattgtttggagacta 233  Q
    ||||| ||||||||||| |||||| ||||||| |||||| ||||||||||||| ||||||||  ||| |||| | ||||||||| ||||||| |||||||    
T  47249173 ttatgatagacaaatattacaatggcttttatcaatttcactttaatttgtttgtcacaatttgacagtataaattagtctttgaattgtttagagacta 47249272  T
Q  234 aacatgttgaataaatgagaa 254  Q
    ||| |||||||||||||||||    
T  47249273 aacctgttgaataaatgagaa 47249293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 134 - 306
Target Start/End: Complemental strand, 41325161 - 41324990
Alignment:
Q  134 ttatggtagacaaatatcacaatgacttttattaatttcgctttaatttgtttctcacaattctacaatatagagtagtctttggattgtttggagacta 233  Q
    ||||| ||||||| ||| |||||| ||||||| |||||| ||||||||||||| ||||||||  ||| |||| | ||||||||| ||||||| |||||||    
T  41325161 ttatgatagacaagtattacaatggcttttatcaatttcactttaatttgtttgtcacaatttgacagtataaattagtctttgaattgtttagagacta 41325062  T
Q  234 aacatgttgaataaatgagaagcaagcacagttgatttattttcttttcaatcctagaaaaatcaatgaggaa 306  Q
    ||| | ||||||||||||||| | |||||| ||  ||| |||| ||| || | |||||||||| |||||||||    
T  41325061 aacctattgaataaatgagaatctagcaca-ttttttttttttttttacatttctagaaaaataaatgaggaa 41324990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 41324960 - 41324895
Alignment:
Q  323 agaacaagttgtaaaagaatttgtaataacatttaccataaaaaattgttaatgaatatctataaa 388  Q
    |||||||||| | || |||| ||||||||||||||||||||||||  ||| |||||||||||||||    
T  41324960 agaacaagttttgaaggaatgtgtaataacatttaccataaaaaagagttcatgaatatctataaa 41324895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 498
Target Start/End: Original strand, 47249499 - 47249552
Alignment:
Q  445 tacttcaacgtttgggattcttaatggaaatttttgtgaaattcctaatggtct 498  Q
    ||||||||||||||||||||||||||||||||   || ||||| ||||||||||    
T  47249499 tacttcaacgtttgggattcttaatggaaattgcagtaaaatttctaatggtct 47249552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 47249370 - 47249435
Alignment:
Q  323 agaacaagttgtaaaagaatttgtaataacatttaccataaaaaattgttaatgaatatctataaa 388  Q
    |||| ||||| | || |||| ||||||||||||||||||| ||||  ||| |||||||||||||||    
T  47249370 agaaaaagttttgaaggaatgtgtaataacatttaccatacaaaagagttcatgaatatctataaa 47249435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 20905958 - 20905803
Alignment:
Q  23 ggtctcttgatgacgcatagaagattatgcataagcttgctcttgctgcataatcttttatgtaaacagtattgcatgttttatgaaacaattactgtta 122  Q
    ||||||||||||| |||| ||||  |||||| || ||| ||| || ||||||||||||||| |||| ||  ||||||||||||||||||||||| |||||    
T  20905958 ggtctcttgatgaggcattgaaggatatgcagaatcttcctcatgttgcataatcttttatataaatagcgttgcatgttttatgaaacaattattgtta 20905859  T
Q  123 ttactactaatttatggtagacaaatatcacaatgacttttattaatttcgcttta 178  Q
    |||||  ||||||||||||||||| |||||||||||||||||| |||||| |||||    
T  20905858 ttactgataatttatggtagacaagtatcacaatgacttttatcaatttcacttta 20905803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 20905802 - 20905682
Alignment:
Q  134 ttatggtagacaaatatcacaatgacttttattaatttcgctttaatttgtttctcacaattctacaatatagagtagtctttggattgtttggagacta 233  Q
    ||||| ||||||| ||| |||||| ||||||| |||||| ||||||||||||| ||||||||  ||| |||| | ||||||||| ||| ||| |||||||    
T  20905802 ttatgatagacaagtattacaatgccttttatcaatttcactttaatttgtttgtcacaatttgacagtataaattagtctttgaattctttagagacta 20905703  T
Q  234 aacatgttgaataaatgagaa 254  Q
    ||| |||||||||||||||||    
T  20905702 aacctgttgaataaatgagaa 20905682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 498
Target Start/End: Complemental strand, 20905469 - 20905415
Alignment:
Q  445 tacttcaacgtttgggattcttaatggaaattt-ttgtgaaattcctaatggtct 498  Q
    ||||||||||||||||||||||||||||||||| | || ||||| ||||||||||    
T  20905469 tacttcaacgtttgggattcttaatggaaatttgtagtaaaatttctaatggtct 20905415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 20905588 - 20905539
Alignment:
Q  339 gaatttgtaataacatttaccataaaaaattgttaatgaatatctataaa 388  Q
    |||| ||||||||||||||||||||||||  ||| |||||||||||||||    
T  20905588 gaatgtgtaataacatttaccataaaaaagagttcatgaatatctataaa 20905539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 42310307 - 42310195
Alignment:
Q  66 tgctgcataatcttttatgtaaacagtattgcatgttttatgaaacaattactgttattactactaatttatggtagacaaatatcacaatgacttttat 165  Q
    |||||||||||||||||| |||| ||| ||||||||| ||||||||||||| |||||||| |  |||| |||||||||||| |||| |||||||||||||    
T  42310307 tgctgcataatcttttatataaatagtgttgcatgttctatgaaacaattattgttattagtgataatctatggtagacaagtatcgcaatgacttttat 42310208  T
Q  166 taatttcgcttta 178  Q
     |||||| |||||    
T  42310207 caatttcacttta 42310195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 42310176 - 42310074
Alignment:
Q  152 acaatgacttttattaatttcgctttaatttgtttctcacaattctacaatatagagtagtctttggattgtttggagactaaacatgttgaataaatga 251  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||  ||| |||| | ||||||||| ||| ||| |||||||||| ||||||||||||||    
T  42310176 acaatgacttttatcaatttcactttaatttgtttgtcacaatttgacagtataaattagtctttgaattatttagagactaaacctgttgaataaatga 42310077  T
Q  252 gaa 254  Q
    |||    
T  42310076 gaa 42310074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 498
Target Start/End: Complemental strand, 42309402 - 42309348
Alignment:
Q  445 tacttcaacgtttgggattcttaatggaaattt-ttgtgaaattcctaatggtct 498  Q
    ||||||||||||||||||||| ||||||||||| | || ||||| ||||||||||    
T  42309402 tacttcaacgtttgggattctcaatggaaatttgtagtaaaatttctaatggtct 42309348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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