View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_low_5 (Length: 473)
Name: NF7688_low_5
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 31278428 - 31277972
Alignment:
| Q |
1 |
aagaactaacgaaaactaagctgtcttattggagagggagaaagaaaactattatagnnnnnnncttttagtcaaaagaatactattaaagttaacttgg |
100 |
Q |
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| T |
31278428 |
aagaactaacgaaaactaagctgtcttattggagagggagaaagaaaactattaaagtttttttcttttggtcgaaagaatactattaaagttaacttgg |
31278329 |
T |
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| Q |
101 |
taaaatttatctctagaaaaataaggtagataacaaaaggaaaataatcaacgagaaagcaatgcaattctattttagaccactcaaagaaagtaagtat |
200 |
Q |
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| T |
31278328 |
taaaatttatctctagaaaaataaggtagataacaaaaggaaaataatcaacgagaaagcaatgcaattctattttagaccactcaaagaaagtaagtat |
31278229 |
T |
|
| Q |
201 |
gaaacataaatacaccgtatagtaatactgataaaaaatttccattgattgttttacatgcatatatattgcgtaatcattgaagtaactgttttatgtt |
300 |
Q |
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| T |
31278228 |
gtaacataaatacaccgtatagtaatactgataaaaaatttccattgatcgttttacatgcatatatattgcgtaatcattgaagtaactgttttatgtt |
31278129 |
T |
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| Q |
301 |
tcttcaaagaaggatataagatcggctcaaaagtaagggtgttaaagctctaa-tttaagtctttcc-gnnnnnnnncatttttcattaaattttataaa |
398 |
Q |
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| T |
31278128 |
tcttcaaagaaggatataagatcggctcaaaagtaagggtattaaagttctaactttaagtctttccaaaaaaaaaacaattttcattaaattttataaa |
31278029 |
T |
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| Q |
399 |
taaaaaggtcccagatacacactaaaaagacttcatatatt-aaatttgttttacac |
454 |
Q |
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| T |
31278028 |
ttaaaaggtcttaaatacagactaaaaagacttcatatattaaaatttgttttacac |
31277972 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 26765274 - 26765306
Alignment:
| Q |
376 |
catttttcattaaattttataaataaaaaggtc |
408 |
Q |
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| T |
26765274 |
cattttacattaaattttataaataaaaaggtc |
26765306 |
T |
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