View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7688_low_9 (Length: 378)
Name: NF7688_low_9
Description: NF7688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7688_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 11690504 - 11690154
Alignment:
| Q |
17 |
atttttcgtgtgattattagatataatttgtgttgcgtgttgaatgttgatactgtcttgtaattttcagattcctttctcaccgtattttggtgctcgt |
116 |
Q |
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| T |
11690504 |
atttttcgtgtgattattagatataatttgtgttgtgtgttgaatgttgatactgacttgtaattttcagattcgtttctcaccgtattttagtgctcgt |
11690405 |
T |
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| Q |
117 |
cttcatatttgatactttgttattgttttaactataaacatttatatcattgactatattgcaggttaccgaggctcttggacgtgcaggccttgaatct |
216 |
Q |
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| T |
11690404 |
cttcatatttgatactttgttattgttttaactataaacatttacatcattgactatattgcaggttaccgaggctcttggacgtgcaggccttgaatct |
11690305 |
T |
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| Q |
217 |
tccaatcttattgttggttttgatttcacaaagagcaatgagtggacaggttcgtatttactacattaattttctcgctaaagttagaatttacgcagta |
316 |
Q |
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| T |
11690304 |
tccaatcttattgttggtgttgatttcacaaagagcaatgagtggacaggttcgtatttactacattaattttctcgctaaagttagaatttacgcagta |
11690205 |
T |
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| Q |
317 |
tgttacagtgaaacatgttgaacttggttttgattttagggaagaattcat |
367 |
Q |
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| T |
11690204 |
tgttatagtgaaacgtgttgaacttggttttgattttagggaagaattcat |
11690154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 7472832 - 7472910
Alignment:
| Q |
190 |
gctcttggacgtgcaggccttgaatcttccaatcttattgttggttttgatttcacaaagagcaatgagtggacaggtt |
268 |
Q |
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| T |
7472832 |
gctcttgcgcgtgcaggccttgagtcttccaatcttattcttggaatcgatttcaccaagagcaatgagtggacaggtt |
7472910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 39203411 - 39203355
Alignment:
| Q |
211 |
gaatcttccaatcttattgttggttttgatttcacaaagagcaatgagtggacaggt |
267 |
Q |
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| T |
39203411 |
gaatcttctaatctcattgttggaattgatttcacaaagagcaatgagtggacaggt |
39203355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 34393877 - 34393809
Alignment:
| Q |
200 |
gtgcaggccttgaatcttccaatcttattgttggttttgatttcacaaagagcaatgagtggacaggtt |
268 |
Q |
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| T |
34393877 |
gtgctggcctagagtcttctaatctcattgttggtattgattttacaaagagcaatgaatggacaggtt |
34393809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 37319523 - 37319466
Alignment:
| Q |
211 |
gaatcttccaatcttattgttggttttgatttcacaaagagcaatgagtggacaggtt |
268 |
Q |
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| T |
37319523 |
gaatcatctaatctcattgttggcattgatttcacaaagagcaatgaatggacaggtt |
37319466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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