View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7689_high_11 (Length: 430)
Name: NF7689_high_11
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 133 - 371
Target Start/End: Complemental strand, 29632862 - 29632628
Alignment:
| Q |
133 |
ctgattttcatttgagttatatccttctgctgctgggaactctttgttctttctttgattttatcaaatagatctgagggtgaccggaggagcggcggca |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29632862 |
ctgattttcatttgagttatatccttctgctgctgggaactctttgttctttctttgattttatcaaatagatctgagggtgaccggaggagcggtggca |
29632763 |
T |
|
| Q |
233 |
gtggcaaagaaagggaggtcaacaattacagtttatttcctctgnnnnnnnnnnnngttgaattaataaaaattgataaaaattgacacatagtcatgtg |
332 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29632762 |
gcggcaaagaaagggaggtcaacaattacagtttatttcctctgttttttttt----ttgaattaataaaatatgataaaaattgacacatagtcatgtg |
29632667 |
T |
|
| Q |
333 |
tgtatgggtggtacggaggaaaggatgtctaccaaacat |
371 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29632666 |
tgtatgggtggtatggaggaaaggatgtctaccaaacat |
29632628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 29632994 - 29632916
Alignment:
| Q |
1 |
ttgttattgttctagttttccatggagttgtatcttcatctgtaaactttttgtgttgctaagttcattggaaacatcc |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29632994 |
ttgttattgttctagttttccatggagttgtatcttcatctgtaaactttttgtgttgctaagttcattggaaacatcc |
29632916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 29633107 - 29633029
Alignment:
| Q |
1 |
ttgttattgttctagttttccatggagttgtatcttcatctgtaaactttttgtgttgctaagttcattggaaacatcc |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29633107 |
ttgttattgttctagttttccatggagttgtatcttcatctgtaaactttttgtgttgctaagttcattggaaacatcc |
29633029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 31046511 - 31046423
Alignment:
| Q |
289 |
gttgaattaataaaaattgataaaaattgacacatagtcatgtgtgtatgggtggtacgg--aggaaaggatgtctaccaaacataactc |
376 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| | |||||||||||||||||| || | ||||||||| ||||||||||||||| |
|
|
| T |
31046511 |
gttgaattaataaaatataataaaaattgacacattg-gatgtgtgtatgggtggtatggcaattaaaggatgtttaccaaacataactc |
31046423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University