View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_high_12 (Length: 429)
Name: NF7689_high_12
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 2356791 - 2356388
Alignment:
| Q |
18 |
atgtttgtttaattgtgtttccttttttgtagatcatctgtaaatccacggttttggatccctgtacacattatgatcccggagaggccaactgaaattg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356791 |
atgtttgtttaattgtgtttccttttttgtagatcatctgtaaatccactgttttggatccctgtacacattatgatcccggagaggccaactgaaattg |
2356692 |
T |
|
| Q |
118 |
cggcattcaatgttgtagcaggtactttgatgtcgtggctatttcactattactgtgttggttggttttgtttgatattattcttcactatagttaaatt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2356691 |
tggcaatcaatgttgtagcaggtactttgatgtcgtggctatttcactattactgtgttggttggatttgtttgatattattcttcactatagttaaatt |
2356592 |
T |
|
| Q |
218 |
tgaaattagctcttttatggaaataactttgttgatttgcttgatgggctgttcgccgaaaggaattcctattttgattttctttcttggcattttccct |
317 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356591 |
tgaacttagctcttttatggaaataactctgttgatttgcttgatggactattcgccgaaaggaattcctattttgattttctttcttggcattttccct |
2356492 |
T |
|
| Q |
318 |
tcatattttagtctgtgaattgaactgcttcattatataggcaaatgcattatatatttagaaatttgattggttgcactaaatgttttctccatcttca |
417 |
Q |
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| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2356491 |
ttatatttttgtctgtgaattgaactgcttcattatataggcaaatgcattatatatttagaaatttgattggttgcactaaatgttttctccatattct |
2356392 |
T |
|
| Q |
418 |
tctc |
421 |
Q |
| |
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|||| |
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|
| T |
2356391 |
tctc |
2356388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 2352636 - 2353039
Alignment:
| Q |
18 |
atgtttgtttaattgtgtttccttttttgtagatcatctgtaaatccacggttttggatccctgtacacattatgatcccggagaggccaactgaaattg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| |
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| T |
2352636 |
atgtttgtttaattgtgtttccttttttgtagatcatctgtaaatccacggttttggatccctatacagattgtgatcccggagaggccaactgaaattg |
2352735 |
T |
|
| Q |
118 |
cggcattcaatgttgtagcaggtactttgatgtcgtggctatttcactattactgtgttggttggttttgtttgatattattcttcactatagttaaatt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |
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| T |
2352736 |
cggcgttcaatgttgtagcaggtactttgatgtcatggctatttcacaattactgtgttagttggttttgttttatattattctttactatagttaaatt |
2352835 |
T |
|
| Q |
218 |
tgaaattagctcttttatggaaataactttgttgatttgcttgatgggctgttcgccgaaaggaattcctattttgattttctttcttggcattttccct |
317 |
Q |
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| T |
2352836 |
ttcaattagctcatttatggaaatatctccgttgatttgcttgatggactgtttgccgaaaggaattaatattttgattttctttcttggcattttcccc |
2352935 |
T |
|
| Q |
318 |
tcatattttagtctgtgaattgaactgcttcattatataggcaaatgcattatatatttagaaatttgattggttgcactaaatgttttctccatcttca |
417 |
Q |
| |
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||| |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
2352936 |
tcagattttagtttgtgaactgaactgcttcattatataggaaaatgcattatatatttagaaatttgattggttgcactaaatgtcttctccatattct |
2353035 |
T |
|
| Q |
418 |
tctc |
421 |
Q |
| |
|
|||| |
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|
| T |
2353036 |
tctc |
2353039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 35571034 - 35570964
Alignment:
| Q |
60 |
aatccacggttttggatccctgtacacattatgatcccggagaggccaactgaaattgcggcattcaatgt |
130 |
Q |
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||||||| |||||||||||| |||| ||| ||||||||||||||||||||||| ||| | ||||||||| |
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| T |
35571034 |
aatccaccattttggatccctatacatattgtgatcccggagaggccaactgaatgtgcagtattcaatgt |
35570964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 3501017 - 3500834
Alignment:
| Q |
23 |
tgtttaattgtgtttccttttttg-tagatcatctgtaaatccacggttttggatccctgtacacattatgatcccggagaggccaactgaaattgcggc |
121 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
3501017 |
tgtttgattgtgtttcctttttttatagatcatctgtaaatccatggttttggatccctatacacattgtgatcccagagaggccaactgaaatcgcggc |
3500918 |
T |
|
| Q |
122 |
attcaatgttgtagcaggtactttgatgtcgtggctatttcactattactgtgttggttggttttgtttgatattattcttcac |
205 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3500917 |
attcaatgttgtagcaggtactttgatgtcatggctatttcaatattactgtgttggttggttttgtttgatattattcttcac |
3500834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 3513331 - 3513172
Alignment:
| Q |
29 |
attgtgtttccttttttgtagatcatctgtaaatccacggttttggatccctgtacacattatgatcccggagaggccaactgaaattgcggcattcaat |
128 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||||||||||||| ||| | |||||| |
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| T |
3513331 |
attgtgtttccttttctatagatcatctgtaaatccaccgttttggatccctatacacattgtgatcccagagaggccaactgaaaatgcagtattcaac |
3513232 |
T |
|
| Q |
129 |
gttgtagcaggtactttgatgtcgtggctatttcactattactgtgttggttggttttgt |
188 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
3513231 |
gtcgtagcaggtactttgatgtcgcagctatttcactattactgtgttggttagttttgt |
3513172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 411
Target Start/End: Complemental strand, 3512620 - 3512441
Alignment:
| Q |
231 |
tttatggaaataactttgttgatttgcttgatgggctgttcgccgaaaggaattcctattttgattttctttcttggcattttcccttcatattttagtc |
330 |
Q |
| |
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|||||||||||| || ||||||||||||||||| |||||||| | ||||| || |||||||| |||||||||||||||||||| ||| |||||||| |
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| T |
3512620 |
tttatggaaatatctccgttgatttgcttgatggactgttcgc-gtaaggagttaaaattttgatgttctttcttggcattttcccctcagcttttagtc |
3512522 |
T |
|
| Q |
331 |
tgtgaattgaactgcttcattatataggcaaatgcattatatatttagaaatttgattggttgcactaaatgttttctcca |
411 |
Q |
| |
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| |||| ||||||| ||||||| |||||| |||| ||||||||||| ||||||| ||| |||||||| |||| ||||||| |
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|
| T |
3512521 |
tctgaactgaactgtttcattaaataggctaatgaattatatatttggaaattttattagttgcacttaatgccttctcca |
3512441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 3500239 - 3500165
Alignment:
| Q |
337 |
ttgaactgcttcattatataggcaaatgcattatatatttagaaatttgattggttgcactaaatgttttctcca |
411 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
3500239 |
ttgaattgcttcattatataggaaaatgcattatatatttggaaatttgattggttgcactaaatgccttctcca |
3500165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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