View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7689_high_15 (Length: 386)

Name: NF7689_high_15
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7689_high_15
NF7689_high_15
[»] chr1 (4 HSPs)
chr1 (86-247)||(38483818-38483974)
chr1 (21-65)||(38483775-38483819)
chr1 (301-334)||(38484029-38484062)
chr1 (87-133)||(1718118-1718164)
[»] chr5 (4 HSPs)
chr5 (87-184)||(9815932-9816029)
chr5 (88-183)||(26354051-26354146)
chr5 (20-74)||(26354192-26354246)
chr5 (19-75)||(9815832-9815888)
[»] chr3 (6 HSPs)
chr3 (86-184)||(20015324-20015422)
chr3 (34-75)||(20015465-20015506)
chr3 (19-70)||(20007541-20007592)
chr3 (19-70)||(26653946-26653997)
chr3 (99-184)||(26654058-26654143)
chr3 (85-133)||(20033508-20033556)
[»] chr4 (1 HSPs)
chr4 (22-70)||(6397050-6397098)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 38483818 - 38483974
Alignment:
Q  86 agtaatgatgttggtgttacacctgaatttcctccagatcttgttgaccttcctaattttttaaaattctgtgatgatgttcctgctgaaagttctgcta 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38483818 agtaatgatgttggtgttccacctgaatttcctccagatcttgttgaccttcctaattttttaaaattctgtgatgatgttcctgctgaaagttctgcta 38483917  T
Q  186 tttttgttgcacagcactgggaagtgggtatgcattgtagtttcaagggtttgacatcttgc 247  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||    
T  38483918 tttttgttgcacagcactgggaagtgggtatgcat-----tttcaagggtttgacatcttgc 38483974  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 38483775 - 38483819
Alignment:
Q  21 attaggtgatggcgattttgttaagaacattgtgaagtggaagag 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  38483775 attaggtcatggcgattttgttaagaacattgtgaagtggaagag 38483819  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 38484029 - 38484062
Alignment:
Q  301 gttatattaatccgggagaacaacattggataaa 334  Q
    ||||||||||||||||||||||||||||||||||    
T  38484029 gttatattaatccgggagaacaacattggataaa 38484062  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 1718118 - 1718164
Alignment:
Q  87 gtaatgatgttggtgttacacctgaatttcctccagatcttgttgac 133  Q
    ||||||||||||||||| |||||| |||||||||  |||||||||||    
T  1718118 gtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 1718164  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 9815932 - 9816029
Alignment:
Q  87 gtaatgatgttggtgttacacctgaatttcctccagatcttgttgaccttcctaattttttaaaattctgtgatgatgttcctgctgaaagttctgct 184  Q
    |||||||||||||| || ||||||||||||||||  ||||||||||||||| |||| ||  |||  | |||| |||||||||||||||||||||||||    
T  9815932 gtaatgatgttggttttccacctgaatttcctcccaatcttgttgaccttcttaatgttggaaagctttgtgttgatgttcctgctgaaagttctgct 9816029  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 26354146 - 26354051
Alignment:
Q  88 taatgatgttggtgttacacctgaatttcctccagatcttgttgaccttcctaattttttaaaattctgtgatgatgttcctgctgaaagttctgc 183  Q
    |||||||||||||||| |||||| |||||||||  ||||||||||| ||| ||||| |  ||| || |||||||||||||||||||||| ||||||    
T  26354146 taatgatgttggtgttccacctggatttcctcccaatcttgttgacattcttaattatcaaaatttttgtgatgatgttcctgctgaaatttctgc 26354051  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 26354246 - 26354192
Alignment:
Q  20 tattaggtgatggcgattttgttaagaacattgtgaagtggaagagaagtgaaag 74  Q
    |||| ||| ||| |||||||||||| |||||||||||| ||||||||||||||||    
T  26354246 tattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaag 26354192  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 9815832 - 9815888
Alignment:
Q  19 gtattaggtgatggcgattttgttaagaacattgtgaagtggaagagaagtgaaagt 75  Q
    ||||| ||| ||| |||||||||| |||||||||||||| ||||||||||| |||||    
T  9815832 gtattgggtcatgtcgattttgttcagaacattgtgaagcggaagagaagtcaaagt 9815888  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 20015422 - 20015324
Alignment:
Q  86 agtaatgatgttggtgttacacctgaatttcctccagatcttgttgaccttcctaattttttaaaattctgtgatgatgttcctgctgaaagttctgct 184  Q
    |||||||||||||||||| |||||| ||||  |||  ||||||||||||||| ||| | |  |||||| || ||||||| |||||||| ||||||||||    
T  20015422 agtaatgatgttggtgttccacctggattttgtcccaatcttgttgaccttcttaagtatggaaaattttgcgatgatgctcctgctggaagttctgct 20015324  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 20015506 - 20015465
Alignment:
Q  34 gattttgttaagaacattgtgaagtggaagagaagtgaaagt 75  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  20015506 gattttgttaagaacattgtgaagcggaagagaagtgaaagt 20015465  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 20007592 - 20007541
Alignment:
Q  19 gtattaggtgatggcgattttgttaagaacattgtgaagtggaagagaagtg 70  Q
    ||||| ||| |||||||||||||||||||| |||||||| ||||||||||||    
T  20007592 gtattgggtcatggcgattttgttaagaacgttgtgaagcggaagagaagtg 20007541  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 26653946 - 26653997
Alignment:
Q  19 gtattaggtgatggcgattttgttaagaacattgtgaagtggaagagaagtg 70  Q
    ||||| ||| |||| |||||||||||||||||||||||  ||||||||||||    
T  26653946 gtattgggtcatggagattttgttaagaacattgtgaaacggaagagaagtg 26653997  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 26654058 - 26654143
Alignment:
Q  99 gtgttacacctgaatttcctccagatcttgttgaccttcctaattttttaaaattctgtgatgatgttcctgctgaaagttctgct 184  Q
    ||||| |||||| |||||||||  |||||||||||  || || || |  |||||| |||| ||||||||||||||||| |||||||    
T  26654058 gtgttccacctggatttcctcccaatcttgttgacactcatatttatggaaaattttgtgctgatgttcctgctgaaaattctgct 26654143  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 20033556 - 20033508
Alignment:
Q  85 tagtaatgatgttggtgttacacctgaatttcctccagatcttgttgac 133  Q
    ||||||||||| ||||||| |||||| |||||||||  |||||||||||    
T  20033556 tagtaatgatgatggtgttgcacctggatttcctcccaatcttgttgac 20033508  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 6397098 - 6397050
Alignment:
Q  22 ttaggtgatggcgattttgttaagaacattgtgaagtggaagagaagtg 70  Q
    |||||| |||| |||||||||||||| ||||||||| ||||||||||||    
T  6397098 ttaggtcatggagattttgttaagaagattgtgaagcggaagagaagtg 6397050  T

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