View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_high_16 (Length: 379)
Name: NF7689_high_16
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 37157360 - 37157010
Alignment:
| Q |
18 |
taaacaagatgttaggcttaaatccagcattttcaattgtaatttttctcctttctttcgtaatggtctcgtttggattttaaaatccaaaatatgttct |
117 |
Q |
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| T |
37157360 |
taaacaagatgttaggcttaaatccagcattttcaattgtaatttttctcctttctttcgtaatggtctcgtttggattttagaatccaaaatatgttgt |
37157261 |
T |
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| Q |
118 |
tcatgttttcatattctaaaatcgaaaaaagatttgtctaaatagtccagtgggaatgtggttcgaattcgtggacgccattagataaaatggactgaca |
217 |
Q |
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| T |
37157260 |
tcatgttttcatattctaaaatcgaaaaaagatttgtctaaatagtccagttggaatgtggttcgaattcgtggacgccattagataaagtggactgaca |
37157161 |
T |
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| Q |
218 |
tacctcaccaccacgagttacaacttaattgatcacgatatcatcagagtgtatatgctttacttttcttggtgggctccatcatcttcttagacaagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37157160 |
tacctcaccaccacgagttacaacttaattgatcacgacaccatcagagtgtatatgcttttcttttcttggtgggctccatcatcttcttagacaagaa |
37157061 |
T |
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| Q |
318 |
cgcaacatatgttgttgtggagtacttagagtttttcagtaacttggatat |
368 |
Q |
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| T |
37157060 |
cgcaacatatgttgttgtggagtacttagagtttttcagtaacttggatat |
37157010 |
T |
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