View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_high_18 (Length: 369)
Name: NF7689_high_18
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_high_18 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 37532877 - 37532543
Alignment:
| Q |
17 |
tggaagtcttaggaaaattgggttatggagttgcattagaaaaagtgcaaccgtatcaatttgattcaggtaggtttaagactctttcacccgtaaaaga |
116 |
Q |
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| T |
37532877 |
tggaagtcttaggaaaattgggttatggagttgcattagaaaaagtgcaaccatatcaatttgattcaggtaggtttaagactctttcacgcgtaaaaga |
37532778 |
T |
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| Q |
117 |
gactcgagaattcgacttaaaatttataatgttatgcaggaacttcacaacagaagaggaggagaattgctgctacaaaggtgtgggatgttgactcaga |
216 |
Q |
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| T |
37532777 |
gactcgagaattcgacttaaaatttataatgttatgcaggaacttcacaacagaagaggaggagaattgctgctacaaaggtgtgggatgttgactcaga |
37532678 |
T |
|
| Q |
217 |
acaagaagaacattctctttccctgtctcagcattcatctccatctcaatctgatcaagaacagactccaggtcaaaaaccaaatgcttctgccatggat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37532677 |
acaagaagaacattctctttccctgtctcagcattcatctccatctcaatctgatcaagaacagactccaggtcaaaaaccaaatgcttctgccatggat |
37532578 |
T |
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| Q |
317 |
tctcagcgatatcgccgagtcaaactcgtcaataa |
351 |
Q |
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| T |
37532577 |
tctcagcgatatcgccgagtcaaactcgtcaataa |
37532543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 43 - 351
Target Start/End: Complemental strand, 26902440 - 26902131
Alignment:
| Q |
43 |
ggagttgcattagaaaaagtgcaaccgtatcaatttgattcaggtaggtttaagactctttcacccgtaaaaga-gactcgagaattcgacttaaaattt |
141 |
Q |
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| T |
26902440 |
ggagttgcatcagaaaaagtgcaaccgtgtcaatttgattcaggtaggtttaagactgtttcacgtgtaaaagaagacttgagaacccaacttaaaattt |
26902341 |
T |
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| Q |
142 |
ataatgttatgcaggaacttcacaacagaagaggaggagaattgctgctacaaaggtgtgggatgttgactcagaacaagaagaacattctctttccctg |
241 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||||||| || |
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| T |
26902340 |
gtaatgttatgcaggaacttcataacagaagaggaggagaattgctgctacaaaggtgtgggatgttgaatcagaaaaacaagagcattctctttctctt |
26902241 |
T |
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| Q |
242 |
tctcagcattcatctccatctcaatctgatcaagaacagactccaggtcaaaaaccaaatgcttctgccatggattctcagcgatatcgccgagtcaaac |
341 |
Q |
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||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||| |||||||| | |||| |||||||||| |
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| T |
26902240 |
tctcagcattcatttccatctcaatctgatctagaacaaactctaggtcaaaaaccaaatgcttctgtcatagattctcaacactatcatcgagtcaaac |
26902141 |
T |
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| Q |
342 |
tcgtcaataa |
351 |
Q |
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|||||||| |
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| T |
26902140 |
ctgtcaataa |
26902131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 44322 - 44199
Alignment:
| Q |
65 |
aaccgtatcaatttgattcaggtaggtttaagactctttcacccgtaaaaga-gactcgagaattcgacttaaaatttataatgttatgcaggaacttca |
163 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||| |||| ||| |||| |||||||| | ||||||| | |||||||||| |||||||||| |
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| T |
44322 |
aaccgtgtcaatttgattcaggtaggtttaagactgtttcacgtgtaatagacgacttgagaattcaaattaaaatctgtaatgttatgtaggaacttca |
44223 |
T |
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| Q |
164 |
caacagaagaggaggagaattgct |
187 |
Q |
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| T |
44222 |
caacagaagaggaggagaattgct |
44199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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